PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.8N8VL
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 200aa    MW: 22493 Da    PI: 9.0756
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.8N8VLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-1989122134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+ttkTplWR gp g+k+LCnaCG++yrk++
  Aradu.8N8VL  89 CSDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRR 122
                  ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.58583119IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-1683133IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-1585138IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.32E-1386122No hitNo description
PROSITE patternPS00344089114IPR000679Zinc finger, GATA-type
CDDcd002021.52E-1389140No hitNo description
PfamPF003202.1E-1789122IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRNCEGVSVI VLGSPRVLGV YSQSHSRLCF CFYSHYYSLL QQRAGVSRST STHLHFHFIF  60
LSFADSVMVM MDLNKEWVCE ELSESKKCCS DCKTTKTPLW RGGPAGPKSL CNACGIRYRK  120
RRASAVGMRK GQERKRERSQ NGGSSSSSDN ELKESLKVNL MALGEEFWLL KKKQRSMCLL  180
GEEEQAAVCL MALSCGYVFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.8N8VL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968671.11e-92GATA transcription factor 16
RefseqXP_025603745.11e-92GATA transcription factor 16
TrEMBLA0A445CNB12e-91A0A445CNB1_ARAHY; Uncharacterized protein
STRINGAES823922e-44(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.18e-19GATA transcription factor 15