PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.8P0M6
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-X1
Protein Properties Length: 785aa    MW: 88737.1 Da    PI: 8.4151
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.8P0M6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.21.5e-07126144119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG H C ++CHeG+CppC+
  Aradu.8P0M6 126 CGVHGCAEICHEGQCPPCR 144
                  ******************8 PP
2zf-NF-X120.41.1e-06286305120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG+H C+++C+ G+CppC++
  Aradu.8P0M6 286 CGRHACKRKCCDGDCPPCSE 305
                  ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.01E-562110No hitNo description
PfamPF014220.0637491IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0727492IPR000967Zinc finger, NF-X1-type
CDDcd060081.22E-9116162No hitNo description
PfamPF014221.3E-4126144IPR000967Zinc finger, NF-X1-type
SMARTSM004383.9E-4126145IPR000967Zinc finger, NF-X1-type
CDDcd060081.86E-8169216No hitNo description
PfamPF014220.016179197IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0011179198IPR000967Zinc finger, NF-X1-type
CDDcd060084.87E-8223272No hitNo description
SMARTSM004381.4233253IPR000967Zinc finger, NF-X1-type
PfamPF014221.3235252IPR000967Zinc finger, NF-X1-type
CDDcd060082.04E-8276324No hitNo description
PfamPF014223.8E-4286304IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0036286305IPR000967Zinc finger, NF-X1-type
CDDcd060083.09E-10303351No hitNo description
PfamPF014220.014313331IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018313332IPR000967Zinc finger, NF-X1-type
SMARTSM0043861370391IPR000967Zinc finger, NF-X1-type
PfamPF014224.2380390IPR000967Zinc finger, NF-X1-type
PfamPF0142222399409IPR000967Zinc finger, NF-X1-type
SMARTSM00438190399444IPR000967Zinc finger, NF-X1-type
PfamPF014220.13481491IPR000967Zinc finger, NF-X1-type
SMARTSM004386.6481513IPR000967Zinc finger, NF-X1-type
SMARTSM004385.1523541IPR000967Zinc finger, NF-X1-type
PfamPF014224.9524540IPR000967Zinc finger, NF-X1-type
SMARTSM004387.2586607IPR000967Zinc finger, NF-X1-type
PfamPF01422130587605IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MPHLPRTHQT LRPNMVLLLA LLRPLPPPLV EYPITHIPKT YFCFCGKLEN PPNDPWVLPH  60
SCGEICGRPL KHNCGHHCLL LCHPGPCPSC PKLVKVSCFC TKIEDVRRCG FKEFSCGKVC  120
GKLLDCGVHG CAEICHEGQC PPCRARSVYQ CRCGKKKEER ECCNRVFGCG EPCEKRLGCG  180
RHVCERGCHV GECGDCPLQG KRACPCGKRV YEGMPCDVTV PLCGATCDKM LSCRYHRCPE  240
RCHRGACVET CRTVVKKSCR CGSLRKDVPC YQDLWCERKC QRMRDCGRHA CKRKCCDGDC  300
PPCSEVCDRR LRCKNHKCPS PCHRGACAPC PIMVTISCAC GETHFEVPCG TEMEQKPPKC  360
PKPCPIAPLC HHAPKLKPHK CHYGACPPCR LPCAEEYSCG HACKLRCHDA KPPPNREFTL  420
KPKKKKIIQQ SECTPGTPCP PCPELVWRPC VGQHIGTERM MVCSDKSQFA CENLCGNPLP  480
CGNHYCTKTC HALENPASTN RLQKSEPCED CSLPCDKERE PKCQHCCPRR CHPGDCPPCK  540
ALIKRSCHCG SMVHVFECIY YNTLSAKDQE KVRSCGGLCH RKLANCTHLC PETCHPGECP  600
NPEKCSKKVI VRCKCQTLKR EWPCHDVQAA YHSAGSHPKD ITKNQFGIGL IPCNSDCKSK  660
MQVVESELHL RKSQVTEVID FNQNLPYIYV KETDNEKLAP KRRKRQKRVQ ESKEATKIQK  720
IISTTKKLLL YLFILIVLVT ATYYGYKGLL WLNDWMNEVD ERRQRHPRIR SLTFDSVTIY  780
FIYFC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1699706PKRRKRQK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.8P0M6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025622920.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A445B7Y30.0A0A445B7Y3_ARAHY; Uncharacterized protein
STRINGXP_004500492.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors