PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.8WJ4P
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 436aa    MW: 49850.3 Da    PI: 8.7837
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.8WJ4PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.22.2e-0761100142
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 
                  kfY++YAk vGFs+r+++++++   +ei+++  +Cs+e + +
  Aradu.8WJ4P  61 KFYRNYAKVVGFSTRVQSTNRK--GNEIKNQLITCSREENGN 100
                  6****************98887..8889*********97655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-561132IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186255291IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-4257288IPR007527Zinc finger, SWIM-type
SMARTSM005750.0014266293IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MVDSTSDSQL NQGEVDYEFE SNEVPKTLGC RSKLFWSLSV VDDQFVPKVG MTFTTLEDAG  60
KFYRNYAKVV GFSTRVQSTN RKGNEIKNQL ITCSREENGN LKYLRPRRRI RQPDVGAWII  120
SKVVLDHSHP CCPSKAEILK QHRELSMSIR RTIENNEEAG IRPSKTYQSF VVPAGGHREE  180
QAERESDAAD FHTVIPCATK SSIEAQFQDV YTHQKFREVQ AQFRGKVNCI TRLTNSAQGY  240
SVYEVQYMSS IFNKFVVTYD SVAAEVKCQC LLFESRGILC RHALSVLSFE QIYTGTMEQE  300
GKEATHTHQE QPRQPLLEPR SKRFDQLVFR SQNICEFAFE SEELTAILHR AYDNVMAEME  360
SLKAKRKGTS SLSHEDANLE SVNELQSPPR IRTRGRPKHR LGSKLDKHIA NVIKKKKTKI  420
NLFDAASVMH SNSSQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110RPRRRIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.8WJ4P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-166HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-142protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444ZLD80.0A0A444ZLD8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.21e-14FAR1-related sequence 4