PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.90UW6
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 189aa    MW: 21366.1 Da    PI: 9.0845
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.90UW6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde lv+ +k++G g+W+t +++ g+ R++k+c++rw +yl
      Aradu.90UW6 14 RGSWTPEEDEALVEHIKKHGEGSWRTLPKHAGLQRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding56.75.7e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+  +++++++lG++ W++Ia+ ++ gRt++++k++w+++l
      Aradu.90UW6  67 RGPFTSEEETNIIQLHALLGNR-WAAIASQLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-27564IPR009057Homeodomain-like
PROSITE profilePS5129426.491965IPR017930Myb domain
SuperFamilySSF466893.52E-3211108IPR009057Homeodomain-like
SMARTSM007178.5E-151363IPR001005SANT/Myb domain
PfamPF002493.9E-171461IPR001005SANT/Myb domain
CDDcd001675.79E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2765116IPR009057Homeodomain-like
PROSITE profilePS5129422.02566116IPR017930Myb domain
SMARTSM007173.5E-1766114IPR001005SANT/Myb domain
PfamPF002498.6E-1767112IPR001005SANT/Myb domain
CDDcd001678.62E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGKAPCCDKH GVKRGSWTPE EDEALVEHIK KHGEGSWRTL PKHAGLQRCG KSCRLRWINY  60
LRPGIKRGPF TSEEETNIIQ LHALLGNRWA AIASQLPGRT DNEIKNYWNT HLKKNLHHHS  120
GGTTQPCLSP HAGIVKSESP STRHMVQWES ARVEAEARLS MESSLNNSWS PAKACPDYFL  180
RLWNSEVGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29141167108B-MYB
1h8a_C1e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.90UW6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025620131.11e-140transcription factor MYB41
SwissprotQ9M2D94e-86MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A445BG231e-139A0A445BG23_ARAHY; Uncharacterized protein
STRINGXP_007143400.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-88myb domain protein 17