PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.90YCV
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 239aa    MW: 27207.7 Da    PI: 8.1599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.90YCVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.9e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEde+l+ + +++G+  +W + + + g++R++k+c++rw++yl
      Aradu.90YCV 14 RGPWSHEEDEILKSYLNKHGSAgNWIALPLKAGLKRCGKSCRLRWLNYL 62
                     89******************999************************97 PP
2Myb_DNA-binding44.24.6e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T +Ed+l+  + +  G++ W++Ia+ ++ gRt++++k++w++
      Aradu.90YCV  69 GAFTDDEDKLISTLYATIGSR-WSLIAAQLP-GRTDNDVKNHWNT 111
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225962IPR017930Myb domain
SuperFamilySSF466894.03E-2611109IPR009057Homeodomain-like
SMARTSM007171.5E-101364IPR001005SANT/Myb domain
PfamPF002491.2E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-221568IPR009057Homeodomain-like
CDDcd001675.53E-81662No hitNo description
PROSITE profilePS5129421.91663117IPR017930Myb domain
SMARTSM007171.5E-1267115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2269116IPR009057Homeodomain-like
PfamPF002498.2E-1369111IPR001005SANT/Myb domain
CDDcd001674.59E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRSPCCDKA NVKRGPWSHE EDEILKSYLN KHGSAGNWIA LPLKAGLKRC GKSCRLRWLN  60
YLRPHIKHGA FTDDEDKLIS TLYATIGSRW SLIAAQLPGR TDNDVKNHWN TKLKKKRNKH  120
CQCHYCPQHC FSKFPTFTPQ VEAFDHNNNT PTTCFESAVL DLYQTPFPVP SKMLPLESDI  180
SATNPLVMKE KDHVGHQWLG YYAEEDDSFL LDIVQNGFAY SQDKNTQLDP SSSSSSSYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.90YCV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025671013.11e-159transcription factor MYB87-like
TrEMBLA0A445DUV81e-157A0A445DUV8_ARAHY; Uncharacterized protein
STRINGXP_007160258.12e-80(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-66myb domain protein 36