PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.91S78

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 523aa MW: 60246.6 Da PI: 9.5478

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.91S78	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.8	5.3e-11	69	146	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY++YAk + Fs+r ++ i+++ +Cs+egk +++ + +++t+++ +C a++ ++ k + w ++k++leH+H++ Aradu.91S78 69 KFYRNYAKVADFSTRGNE---------IKNQLITCSREGKWKSKISL---TEKTNPTAGLNCPARIYMHTLKdVSAWIISKVVLEHSHPC 146 69********998775.........5556889****99887...8999*********9988879************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-8	69	147	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.05	315	351	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-4	317	347	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.4E-4	326	353	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFE SNDVPETLGC RSGLFWVYYI RHDWPLSVVD DQFIPKVGMT 60 FTTLEDAGKF YRNYAKVADF STRGNEIKNQ LITCSREGKW KSKISLTEKT NPTAGLNCPA 120 RIYMHTLKDV SAWIISKVVL EHSHPCYPSK AEMLKQHRKL SMSIRRTIEN NEEADIRPSK 180 TYQSFVAAAG DLYEDRHIWV PIYLDHHFWA GMRSTQRSES MHSFFNNFIT RNSSLIQEQA 240 ERELDAADFH TVIPCATKSS IEAQFQDVYT HQKFREVRAQ FRGKANCITR LTNFALGYSV 300 YVVREQVSSS IFNKFVVTYD SVAAEVKCQC LLFESRGILC RHALSVLGFE QVSQVSPRYI 360 LERWSKKVKR RHTHIKSSYD EPLIEPRSKR FVQLVFRSQN ICEFASESEE MTAFLHRAYD 420 NVMAEMESLK AKRKGTSSLS HEDANLESVN ELQSPPRIRT RGRPKNRLGS KLDKQIKNAS 480 KKKKTKALNK GFSLKASWGD RFQGVCSTLF GFKKSQVMGV YLI

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MDHSTSDCQL NPGEVDYEFE SNDVPETLGC RSGLFWVYYI RHDWPLSVVD DQFIPKVGMT  60
FTTLEDAGKF YRNYAKVADF STRGNEIKNQ LITCSREGKW KSKISLTEKT NPTAGLNCPA  120
RIYMHTLKDV SAWIISKVVL EHSHPCYPSK AEMLKQHRKL SMSIRRTIEN NEEADIRPSK  180
TYQSFVAAAG DLYEDRHIWV PIYLDHHFWA GMRSTQRSES MHSFFNNFIT RNSSLIQEQA  240
ERELDAADFH TVIPCATKSS IEAQFQDVYT HQKFREVRAQ FRGKANCITR LTNFALGYSV  300
YVVREQVSSS IFNKFVVTYD SVAAEVKCQC LLFESRGILC RHALSVLGFE QVSQVSPRYI  360
LERWSKKVKR RHTHIKSSYD EPLIEPRSKR FVQLVFRSQN ICEFASESEE MTAFLHRAYD  420
NVMAEMESLK AKRKGTSSLS HEDANLESVN ELQSPPRIRT RGRPKNRLGS KLDKQIKNAS  480
KKKKTKALNK GFSLKASWGD RFQGVCSTLF GFKKSQVMGV YLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.91S78

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444X817	0.0	A0A444X817_ARAHY; Uncharacterized protein
TrEMBL	A0A445AF03	0.0	A0A445AF03_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-26	far-red elongated hypocotyls 3