PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.94QSA
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 94aa    MW: 10592.9 Da    PI: 10.0235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.94QSAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.7e-0824601854
                 HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 +  ++Lr+l+P+ + + +s K+s + +L+++++YIk+L
  Aradu.94QSA 24 QLVSKLRQLVPEiR-NRRSDKVSASKVLQETCNYIKNL 60
                 55689*******77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.934660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-82275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-52460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-92479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSGSRSSRQ RSHSTRISDD QIIQLVSKLR QLVPEIRNRR SDKVSASKVL QETCNYIKNL  60
HREVDDLSER LGQLLSTIDA DSAEAAIIRS LLSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12939RQLVPEIRNRR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.94QSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015962412.18e-60transcription factor PRE6-like
RefseqXP_016196793.18e-60transcription factor PRE6-like
RefseqXP_020996792.18e-60transcription factor PRE6-like
RefseqXP_025649918.18e-60transcription factor PRE6
SwissprotQ9LJX12e-38PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A444ZQ302e-58A0A444ZQ30_ARAHY; Uncharacterized protein
STRINGGLYMA09G37370.13e-46(Glycine max)
STRINGGLYMA18G49320.13e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.17e-37bHLH family protein