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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aradu.96XJX | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 2562aa MW: 289309 Da PI: 7.9279 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 30.8 | 6.7e-10 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
+++WT eE+ l+ +v ++G g W+tI + R+ ++k++w+++
Aradu.96XJX 5 KQKWTSEEEAALKAGVVKHGVGKWRTILKDPEfsgvlYLRSNVDLKDKWRNL 56
79***********************************88***********96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 11.155 | 1 | 58 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.54E-14 | 2 | 71 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 1.7E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 6.3E-12 | 4 | 56 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 2.6E-6 | 5 | 56 | IPR001005 | SANT/Myb domain |
| CDD | cd11660 | 1.27E-18 | 6 | 56 | No hit | No description |
| SMART | SM00526 | 0.0086 | 113 | 189 | IPR005818 | Linker histone H1/H5, domain H15 |
| SuperFamily | SSF46785 | 2.56E-5 | 119 | 165 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| Gene3D | G3DSA:1.10.10.10 | 4.2E-5 | 120 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| Gene3D | G3DSA:3.40.50.300 | 4.9E-42 | 1597 | 1652 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 6.63E-28 | 1601 | 1651 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF13086 | 3.0E-59 | 1604 | 1979 | No hit | No description |
| Gene3D | G3DSA:3.40.50.300 | 4.9E-42 | 1714 | 1766 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 6.63E-28 | 1717 | 1788 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 4.9E-42 | 1801 | 1802 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 6.63E-28 | 1893 | 2008 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 4.9E-42 | 1933 | 2008 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 9.9E-4 | 2087 | 2111 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 5.78E-24 | 2087 | 2298 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF13087 | 1.4E-51 | 2088 | 2272 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006334 | Biological Process | nucleosome assembly | ||||
| GO:0000786 | Cellular Component | nucleosome | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0008266 | Molecular Function | poly(U) RNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 2562 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKAGV VKHGVGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNLSVMA 60 NGWSSREKSR LAIRRVHQAP KHDENPFAVA PFTPSDEDIV DVKPIQASRD VVPFSGPKRL 120 DNLIMEAITT LKETGGSNKT TIAAFIESHY YELEIENTVQ FSIFLLTLVI PLNIRDLLDR 180 WRGIQMEEEE DDGDIPDPSK RHLLHLRKEQ WFADAYNFLI CLPCESHFWC GFWDIMGPLL 240 ETFYNYFKDD RHDSPLRRLW KRISDEMKRC LQCVSQHHQA QDMYNMEYES SSIGPLLDVL 300 HKLDNERVTL HLRDINTKLA GEEYNPACDN AEVVNLLYEV LMFPVLLDYQ PLFNEFELFV 360 EAIDCKHELA LSGHQQFPGV YALLFCKRSV RSVGYRLAES MGKLRRGADL EPLQPLLKKF 420 IGCLEADALP LALDTSTPRA QLDRVSLWIG IKSLLSFLEP TTFEEGILEQ YPFFVDIVLN 480 HISGDSLEFS HAVNCLRLLF EMLGCKLWLR STLPPSSLEA LQDGEHEKQR RHFLYFLLHQ 540 VPVSSNFSIL TRKLANQIAL LVVYRGYRMN PPCPPFECSH MWGPALVSSL KDSSLHSSLR 600 QPAFDLIQII IVSDAAALVN SVLSCCTNPN TESSMENKVI IELDDESDDI CFQAIPNCAM 660 KDDDCSWAQF SAQARIIYQE FREWMCIPML WVDVLVDISP SVLPISFSQA IFWARSRFPM 720 IELEKSSETV LPVRSCLSSY AAEISSSFGW KVPTGSDDGG DGKKSKNSVE VLAMSSPLIR 780 TFNRLAAYFL VQMGQGVLQS QWTWQPLMSE SLILSLLDPN DDVRQFGKSV LEQVSNTRGL 840 SCGIKFLCSH ELSLYAIILG LKHAMRLVQL DSVMSKFHSL HHFWFILCKL LKESELSPQE 900 LPGEMDSDLM MPKFSSQGGF LKQPAFDSLP LEMDKHVSNV ELKTIYKFGG LISEMAWPIF 960 CKSLVKGKEF VDYNLCQMTC VRLLEVLPIV VDKHICLGKE HGNFRMHVQN KLDFKWLHDL 1020 MQWGRSSLKV VVVYWKRAVI QLLNLFKGFC DKTSVSTIMT IEHLISYDGC PWEELIKQVS 1080 HLSVSLSSGV SHKSRETNMT PKSMCKSLSF EKNPFTSDLH SSTMADKDLQ IFDSTMMSCK 1140 RGTKDVIILS DDEGEAKVSP NKSILSDNEI GNHVFHGNLM FCDAGKSLLT ADLVKQNVSS 1200 MEFCGKIMEP FQKNICTDSP ILSSEKQNSS NFSLHIKPAV TPFADSKGLD TQSREVSLKS 1260 KDRVNFTKFS DEAVNVKKLN KSCSSAVPKI GDTKSSKSSK MSSHSQDAED SQLEPAVKPV 1320 GRIQLHVPKP TSVVRRQVIQ LETPLDNNSV SLYKLKNPEN RFKPPRLDDW YKPILETNYF 1380 ATVGLSSTRK DETQTVGKLK EVPVYFQSPE QYVEIFRPLV LEEFKAQIQN TFHEMSSWED 1440 ASYGNLSVMS VERVDDFHFV RFVHDDSDSA ACKSFSENDL ILLSKDPPQK SSQEVHMVGK 1500 VERREKDNKR SLSIVLIRFY LQNGSSRLNL ARRNLTERSK WHACRIMSIT PQIREFHALS 1560 SVKAIPLLPL ILNPVSDSIC LGGTKEADLN KLCLSLQQTL RSSFNVCQLQ AISASIGRVE 1620 PKKNSELSLI QGPPGTGKTR TIVAIVSALL ASASTSLKMN CVKRAFNESL NKNSFSPFSR 1680 PKISQSVAIA RAWQDAALAR QMSEDVQSSL KSFRSSVRQR VLICAQSNAA VDELVSRISN 1740 HGLYGSNGKM YKPYLVRVGN AKTVHPNSLP FFIDTLVDQR VTEEKMHLNE GKKDMKVDLS 1800 VLRSNLEKLV DSIRFYESKR ADLRDGNSNV RSHLHDDSHV GDEKEMSDTE IKVTLRKLYE 1860 QKHQLYKDLS NVQAQEKKVN EETRSLRNKL RKSILMEAEI VVTTLSGCGG DLYGVCSETM 1920 LSSKFGGPSE LTLFDAIVID EAAQALEPAT LIPLQLLKSS GTKCIMVGDP KQLPATVLSN 1980 VASKYLYECS MFERLQRAGH PVIMLTEQLF LLISCKSFEE SKGSHVDGYE EGFENPLILM 2040 RSRVDVYEEG FENPLILMIN MVKCIYSSRR LAMVQISFPG SDERSCVYRM HPEICKFPSL 2100 HFYDNKLLNG SQMSRKSAPF HQTKCLGPYV FYDITDGREV RGKNMGAMSL CNEHEADAAV 2160 EVLRFFQKRF PTEFTGGRIG IITPYKSQLS LLRSRFLDTF GSSITAEIEF NTVDGFQGRE 2220 VDILLLSTVR AALLSNAASE RNSSTIGFVA DVRRMNVALT RAKLSLWIFG NARTLQTNHN 2280 WASLVKDAEE RDLIMTAKRP YHSIFKTASK DKDFLENSND VIRQPKHERE VKDNDKDGFE 2340 SKKKRVASEV KSKGRRDDKA LGKSALCKEK KSIDERNSIK NLTCLAAKCE SRSCSDGMLT 2400 TTEQRVFDNG EGKDKMKINR VETILGKRQS KFENTRSSAH HVVEETGSRQ KTSKLSELDR 2460 PNLCSRGDTS NSNEVSASSL EGCHKKEHAD QVKCTTKSGV SEISKRKQQR KAVDAILYSS 2520 LISTKKDETL TKASAKRRFS SSIANESVKP PKTTNGKHPS LC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5mzn_A | 2e-44 | 1879 | 2297 | 387 | 701 | Helicase SEN1,Helicase SEN1 |
| 6i59_A | 2e-44 | 1879 | 2297 | 387 | 701 | Helicase SEN1 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Aradu.96XJX |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KF208677 | 0.0 | KF208677.1 Arachis hypogaea putative MYB-related protein 23 (MYB23) gene, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015933387.1 | 0.0 | uncharacterized protein LOC107459682 isoform X1 | ||||
| TrEMBL | A0A445CIT6 | 0.0 | A0A445CIT6_ARAHY; Uncharacterized protein | ||||
| STRING | XP_007150842.1 | 0.0 | (Phaseolus vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G49950.3 | 1e-61 | telomere repeat binding factor 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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