PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.9C9UT

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 459aa MW: 48469.8 Da PI: 8.5453

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.9C9UT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Aradu.9C9UT 64 FVCEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	15.1	6.5e-05	141	162	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC+ C+k + +s+ k H++t+ Aradu.9C9UT 141 KCERCSKKYAVQSDWKAHMKTC 162 8*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.33E-7	63	86	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	63	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	64	86	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.2E-5	64	86	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	64	86	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	66	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	105	135	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.5E-4	128	161	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.33E-7	135	161	No hit	No description
SMART	SM00355	82	140	160	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MTTEPPPMPL SGEEAATLSA LDLETAPQPP APPLKKKRNL PGMPDPDAEV IALSPKTLLA 60 TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRATKEV RKRVYVCPEP SCVHHNPSRA 120 LGDLTGIKKH FCRKHGEKKL KCERCSKKYA VQSDWKAHMK TCGTREYRCG CGTLFSRRDS 180 FVTHRAFCDA LAEESAKAQT LSTDDKDGVG AGVTAASSSS PPQPPLTPST SVVSPTLSIQ 240 SSEIPENATR LSPPTTCVAK AVTTSTVLAT VLASSAGAAA PSTTSFPNVT AATSLSLSVP 300 LYLSNNVNDP RHHYTACPQP STTAALSATA LLQKAAQMGA ASSNTSLLRG LGLATSSTGY 360 HPQDESGIDN PIMQWNMSSH VKQENPSLAD HNLGLGLPCG DPGFADVMMG SPPMTRDLLG 420 LGIGGNGGDN VSRGGLSALL TSFGGNFDSS GDAGGVRHQ

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MTTEPPPMPL SGEEAATLSA LDLETAPQPP APPLKKKRNL PGMPDPDAEV IALSPKTLLA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRATKEV RKRVYVCPEP SCVHHNPSRA  120
LGDLTGIKKH FCRKHGEKKL KCERCSKKYA VQSDWKAHMK TCGTREYRCG CGTLFSRRDS  180
FVTHRAFCDA LAEESAKAQT LSTDDKDGVG AGVTAASSSS PPQPPLTPST SVVSPTLSIQ  240
SSEIPENATR LSPPTTCVAK AVTTSTVLAT VLASSAGAAA PSTTSFPNVT AATSLSLSVP  300
LYLSNNVNDP RHHYTACPQP STTAALSATA LLQKAAQMGA ASSNTSLLRG LGLATSSTGY  360
HPQDESGIDN PIMQWNMSSH VKQENPSLAD HNLGLGLPCG DPGFADVMMG SPPMTRDLLG  420
LGIGGNGGDN VSRGGLSALL TSFGGNFDSS GDAGGVRHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	136	205	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-33	136	205	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.9C9UT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015933910.1	0.0	protein indeterminate-domain 1
Swissprot	Q9LVQ7	1e-125	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A445BQX1	0.0	A0A445BQX1_ARAHY; Uncharacterized protein
STRING	GLYMA06G03630.2	1e-178	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-112	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]