PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.9KR0Q

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 489aa MW: 56211.2 Da PI: 9.5313

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.9KR0Q	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.8	7.4e-18	27	113	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a + ++ k g w ++k++l+H+H+++p Aradu.9KR0Q 27 QFYRNYAKAAGFSIRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPAIIYIHTLKdVGAWIISKIVLDHSHPCCP 113 6**************98887..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-15	27	113	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	5.2E-5	276	309	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.087	276	312	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	287	314	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MIPFSIVDDQ FVPKVGMTFT TIEDAGQFYR NYAKAAGFSI RVRSTNRKGN EIKNQLITCS 60 REGKWKSKIS PTEKTNPTAG LNCPAIIYIH TLKDVGAWII SKIVLDHSHP CCPSKAKILK 120 QHRELSMSIR RTIENNEEAD LYEDRHIWVP IYLDHHFWAC MRSTQRSESM HSFFNNFITR 180 NSSLIQFVKQ YDNCLGSREQ AERESNAADF YMVISCVTEF SIEAQFQDVY THQKFRKVQA 240 QFRGKANCIT RLTNSALGYL VYEVGEQVSS LIFNKFVVTY DTVAVEVKCQ CLLFESRGIL 300 CRHALSVLSF ERVSQVSPRY ILERWSKKVK RRHTHIKSSH DEPLLESRNK RFDQLVFCSQ 360 NICEFASESE ELTAIMHRAY DNVMVEMESL KAKRNGTSSL SHEDANLKSV NELQSPPRIR 420 TRGRPKNRLG SKLDKQIANA IKKKKTKGLN ELNLFDAASV VHSNYSQYQG HVMNYQFRVL 480 AAADNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MIPFSIVDDQ FVPKVGMTFT TIEDAGQFYR NYAKAAGFSI RVRSTNRKGN EIKNQLITCS  60
REGKWKSKIS PTEKTNPTAG LNCPAIIYIH TLKDVGAWII SKIVLDHSHP CCPSKAKILK  120
QHRELSMSIR RTIENNEEAD LYEDRHIWVP IYLDHHFWAC MRSTQRSESM HSFFNNFITR  180
NSSLIQFVKQ YDNCLGSREQ AERESNAADF YMVISCVTEF SIEAQFQDVY THQKFRKVQA  240
QFRGKANCIT RLTNSALGYL VYEVGEQVSS LIFNKFVVTY DTVAVEVKCQ CLLFESRGIL  300
CRHALSVLSF ERVSQVSPRY ILERWSKKVK RRHTHIKSSH DEPLLESRNK RFDQLVFCSQ  360
NICEFASESE ELTAIMHRAY DNVMVEMESL KAKRNGTSSL SHEDANLKSV NELQSPPRIR  420
TRGRPKNRLG SKLDKQIANA IKKKKTKGLN ELNLFDAASV VHSNYSQYQG HVMNYQFRVL  480
AAADNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.9KR0Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-30	far-red elongated hypocotyls 3