PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.9Q62W
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 192aa    MW: 21953.8 Da    PI: 7.8769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.9Q62WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.51e-201663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+++++ +G+++Wkt+a + g++R++k+c++rw++yl
      Aradu.9Q62W 16 RGAWTPEEDQKLAQCIEVHGPKRWKTVATKSGLNRCGKSCRLRWLNYL 63
                     89********************************************97 PP
2Myb_DNA-binding54.42.9e-1769113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + eE++l+++++k+lG++ W++Ia++++ gRt++++k++w++ 
      Aradu.9Q62W  69 RGNISDEEEDLIIRLHKLLGNR-WSLIAKRLP-GRTDNEIKNYWNSC 113
                      7899******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2671167IPR017930Myb domain
SuperFamilySSF466895.35E-3015110IPR009057Homeodomain-like
SMARTSM007171.5E-161565IPR001005SANT/Myb domain
PfamPF002498.6E-191663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251770IPR009057Homeodomain-like
CDDcd001675.15E-121863No hitNo description
PROSITE profilePS5129420.80868118IPR017930Myb domain
SMARTSM007171.6E-1468116IPR001005SANT/Myb domain
PfamPF002491.0E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2571118IPR009057Homeodomain-like
CDDcd001677.01E-1273111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MPTMEGNGST KKTYNRGAWT PEEDQKLAQC IEVHGPKRWK TVATKSGLNR CGKSCRLRWL  60
NYLRPNIKRG NISDEEEDLI IRLHKLLGNR WSLIAKRLPG RTDNEIKNYW NSCLCKKVNP  120
KDLKPHTSST TPQETRADEG ISSALESGGS GHMEMKFDFN EFFDFSIDEG AYALDWVNKF  180
LELDVIPESS TE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-31161184105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-311511826128MYB TRANSFORMING PROTEIN
1mse_C2e-31161184105C-Myb DNA-Binding Domain
1msf_C2e-31161184105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.9Q62W
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963447.11e-143transcription factor WER-like
RefseqXP_020997706.11e-143transcription factor WER-like
RefseqXP_025651716.11e-143transcription factor WER-like
RefseqXP_025651717.11e-143transcription factor WER-like
RefseqXP_025698368.11e-143transcription factor WER-like
RefseqXP_025698369.11e-143transcription factor WER-like
SwissprotQ9SEI02e-51WER_ARATH; Transcription factor WER
TrEMBLA0A444WUF71e-141A0A444WUF7_ARAHY; Uncharacterized protein
STRINGGLYMA05G04900.19e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.19e-54myb domain protein 66
Publications ? help Back to Top
  1. Savage N, et al.
    Positional signaling and expression of ENHANCER OF TRY AND CPC1 are tuned to increase root hair density in response to phosphate deficiency in Arabidopsis thaliana.
    PLoS ONE, 2013. 8(10): p. e75452
    [PMID:24130712]
  2. Cheng Y, et al.
    Brassinosteroids control root epidermal cell fate via direct regulation of a MYB-bHLH-WD40 complex by GSK3-like kinases.
    Elife, 2018.
    [PMID:24771765]
  3. Kiefer CS, et al.
    Correction: Arabidopsis AIP1-2 restricted by WER-mediated patterning modulates planar polarity.
    Development, 2015. 142(5): p. 1022
    [PMID:25715402]
  4. Kwak SH,Song SK,Lee MM,Schiefelbein J
    TORNADO1 regulates root epidermal patterning through the WEREWOLF pathway in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(12): p. e1103407
    [PMID:26451798]
  5. Zhu Y, et al.
    The Histone Chaperone NRP1 Interacts with WEREWOLF to Activate GLABRA2 in Arabidopsis Root Hair Development.
    Plant Cell, 2017. 29(2): p. 260-276
    [PMID:28138017]
  6. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]
  7. Mira MM, et al.
    Expression of Arabidopsis class 1 phytoglobin (AtPgb1) delays death and degradation of the root apical meristem during severe PEG-induced water deficit.
    J. Exp. Bot., 2017. 68(20): p. 5653-5668
    [PMID:29059380]
  8. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]