PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.9Y6NH

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 432aa MW: 48165.4 Da PI: 7.3551

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.9Y6NH	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.6e-52	10	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yLk+k+++ +l++ e ik++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ Aradu.9Y6NH 10 MLPGFRFHPTDEELVGFYLKRKIQQMPLSI-ELIKQLDIYKYDPWDLPKVAGTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGS 106 579*************************.89***********9888999***********************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfykgra kg+ktdW+mhe+rl Aradu.9Y6NH 107 KCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 137 77*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.426	10	192	IPR003441	NAC domain
SuperFamily	SSF101941	5.23E-56	10	147	IPR003441	NAC domain
Pfam	PF02365	2.0E-25	12	137	IPR003441	NAC domain
SuperFamily	SSF101941	5.23E-56	180	192	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MEGEKLDEIM LPGFRFHPTD EELVGFYLKR KIQQMPLSIE LIKQLDIYKY DPWDLPKVAG 60 TGEKEWYFYC PRDRKYRNSA RPNRVTGAGF WKATGTDRPI YSSEGSKCIG LKKSLVFYKG 120 RAAKGVKTDW MMHEFRLPSL VDSSSSDKTT IPANVGIYHS LKPFLTGSIS HFLADFNFNM 180 QDSWAICRIF KKTNATAQRA LSHSWVSTLP ETTPTTTTND TDHIFNMPTM MAKKTSFMTQ 240 FCTNYTSDTQ IQDVASSYKP PFININPLLY KQFDHHHHQL PPIISNGDLI SNDCLIPSST 300 TPLETSSNSA KPTMDFSSLL LNMSSSVLGD FAGKTSSSSS SQEGTAAAAT ATTITSSFGG 360 GMQEHYPTIP LLRQMHQGNN NNNNNIGINN NNVSAGGEEQ ELEKVGSIVG FPFMNIGDAW 420 KSNMLWDTSC PL

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MEGEKLDEIM LPGFRFHPTD EELVGFYLKR KIQQMPLSIE LIKQLDIYKY DPWDLPKVAG  60
TGEKEWYFYC PRDRKYRNSA RPNRVTGAGF WKATGTDRPI YSSEGSKCIG LKKSLVFYKG  120
RAAKGVKTDW MMHEFRLPSL VDSSSSDKTT IPANVGIYHS LKPFLTGSIS HFLADFNFNM  180
QDSWAICRIF KKTNATAQRA LSHSWVSTLP ETTPTTTTND TDHIFNMPTM MAKKTSFMTQ  240
FCTNYTSDTQ IQDVASSYKP PFININPLLY KQFDHHHHQL PPIISNGDLI SNDCLIPSST  300
TPLETSSNSA KPTMDFSSLL LNMSSSVLGD FAGKTSSSSS SQEGTAAAAT ATTITSSFGG  360
GMQEHYPTIP LLRQMHQGNN NNNNNIGINN NNVSAGGEEQ ELEKVGSIVG FPFMNIGDAW  420
KSNMLWDTSC PL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	2	199	8	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	2	199	8	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	2	199	8	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	2	199	8	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-50	2	199	8	171	NAC domain-containing protein 19
4dul_B	1e-50	2	199	8	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.9Y6NH

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU661928	1e-114	EU661928.1 Glycine max NAC domain protein (NAC36) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015956861.1	0.0	protein FEZ-like isoform X1
Swissprot	Q9ZVH0	1e-100	FEZ_ARATH; Protein FEZ
TrEMBL	A0A444ZUI3	0.0	A0A444ZUI3_ARAHY; Uncharacterized protein
STRING	XP_007158658.1	1e-154	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	5e-98	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]