PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.9Z8LC

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 434aa MW: 48384.2 Da PI: 7.839

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.9Z8LC	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	257	311	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Aradu.9Z8LC 257 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRI 311 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.499	254	314	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-28	255	312	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.35E-17	255	311	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	257	312	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-8	261	310	IPR001005	SANT/Myb domain
Pfam	PF14379	6.8E-20	355	401	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MNENKLDFHS EYGNHSSCQY FGIRQQPWNM GPCNNQPLSA TCVGVGVGRG RGGGGEQEVV 60 LPYSAQAKPS STIISRFESP ASAFYATEIF MGFPQYDSHQ VGNPSNLMPH QLSIKNINND 120 MEFPLYQSSK ESLFFDSSVN DQNSPNNFEL PNTLQAIKSQ WNGDQCNGSP EKSNKIPCGN 180 FPASNFLPIE QHKLFNDDAA PVTRSISIPK ANQESTVACG SFNSPVQQLS FSSPQEKLSP 240 TISAGNLVGN GPIASSKTRI RWTQDLHEKF VECVNRLGGA EKATPKAILR LMDSDGLTIF 300 HVKSHLQKYR IAKYMPESTQ GSYALPKKYF FPFSGKSEKR TSAENVHLDV KAGLQIKEAL 360 QLQLDVQRRL HEQLEIQRKL QLQIEEQGKQ LKMMFDRQQK SNNSERSSKD NNNDDNEVTI 420 LEGTGISHFP SKIS

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MNENKLDFHS EYGNHSSCQY FGIRQQPWNM GPCNNQPLSA TCVGVGVGRG RGGGGEQEVV  60
LPYSAQAKPS STIISRFESP ASAFYATEIF MGFPQYDSHQ VGNPSNLMPH QLSIKNINND  120
MEFPLYQSSK ESLFFDSSVN DQNSPNNFEL PNTLQAIKSQ WNGDQCNGSP EKSNKIPCGN  180
FPASNFLPIE QHKLFNDDAA PVTRSISIPK ANQESTVACG SFNSPVQQLS FSSPQEKLSP  240
TISAGNLVGN GPIASSKTRI RWTQDLHEKF VECVNRLGGA EKATPKAILR LMDSDGLTIF  300
HVKSHLQKYR IAKYMPESTQ GSYALPKKYF FPFSGKSEKR TSAENVHLDV KAGLQIKEAL  360
QLQLDVQRRL HEQLEIQRKL QLQIEEQGKQ LKMMFDRQQK SNNSERSSKD NNNDDNEVTI  420
LEGTGISHFP SKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-23	257	314	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-23	257	314	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-23	257	314	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-23	257	314	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.9Z8LC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015939070.1	0.0	myb family transcription factor PHL5-like isoform X1
Swissprot	Q0WVU3	1e-67	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A445BMX4	0.0	A0A445BMX4_ARAHY; Uncharacterized protein
STRING	GLYMA02G30800.1	1e-160	(Glycine max)
STRING	GLYMA09G17404.1	1e-160	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	5e-70	G2-like family protein