PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.A0DB1

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 259aa MW: 29476.4 Da PI: 9.2955

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.A0DB1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.3	2.8e-14	159	246	1	87
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 kfY +YAk+vGF +++++++ k+++ +++ ++eg+re++ + + r ++ t t C+a++ v ++k ++ w+v++lel H+ Aradu.A0DB1 159 KFYANYAKKVGFVTKIRNTNFDkmrKESKIPVNQSIHFTREGYRESRVNV---ATRANKITATRCRARMYVMLDKeKKSWVVSRLELRHSN 246 6**********9999988775545556668899999****9877...9999*************9999*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-11	159	247	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MVLYSYQRRQ PPPSDHQSAA PFSSEVYAPD YSPYLPFGGY GAWFALGYIS GTNFLQSNIQ 60 EKGAVQYFRK RASSMAFSTP EGGSISTLIN PIQGDEEFSM GEVVIQEQEG TKVDKITDIV 120 VTRKDELDSR HELPDHSGDG EEEIPVIGMS FGPLPLAQKF YANYAKKVGF VTKIRNTNFD 180 KMRKESKIPV NQSIHFTREG YRESRVNVAT RANKITATRC RARMYVMLDK EKKSWVVSRL 240 ELRHSNPCLA KKVVHYHEY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.A0DB1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025670217.1	1e-109	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445DQ97	1e-122	A0A445DQ97_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23567	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-07	FAR1 family protein