PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.A0MWV

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 520aa MW: 60491.6 Da PI: 9.5129

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.A0MWV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.3	5.1e-08	153	198	45	89
FAR1 45 kkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kk+ + ++r + t gCka++ v +++ +++w+v+kle++H+H++ Aradu.A0MWV 153 KKELKAASRVKRITTSGCKARMYVMLDRqKDNWMVSKLESKHTHTC 198 444567888899999********9998*************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-6	151	198	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.755	346	382	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MQHERMKVLR NHRLVNHTRP FIEKRFPVYV YLLKASISHY VHGYINFEEA LYDTAYDVSE 60 HSNSTDVNVL SLSEDDTPLV EQGKESEDVI QKKDDAMATN DELPDHTGIS IEEIPYVGLR 120 FDSLQRAQEF YSNYAKRVRF VTRIRNTNFD KTKKELKAAS RVKRITTSGC KARMYVMLDR 180 QKDNWMVSKL ESKHTHTCSA KQAVHYSEYR ELTMHANSRR HRMIDLYDDC RIWVPIYFQA 240 GMRSTQRSES MHAFFGGYLR CKSGLVQFVH EYDNVLGNKE QKELEDDAAD SKGVREYTTS 300 KFREVQHEFR KRGDCLVRGV AQEGDLFRVT VNKQYLLYGE PRSWTYIVKF DLETHKVRCE 360 CNMFGSRGIL CCHCLAVIFY YGLDREPSCY VIPRWSKNVQ QKHTFIKSSQ NEKSKLLDYR 420 ANLGSRRVPT TQNSTRDPTL GEFDIQGPSK VSTKGRLRLK RLGSELDTSI KKSMRRKKKN 480 PPPEVNQAMN PDIVGGYAGR ANESQEHGGF LLLLNSFRPT

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MQHERMKVLR NHRLVNHTRP FIEKRFPVYV YLLKASISHY VHGYINFEEA LYDTAYDVSE  60
HSNSTDVNVL SLSEDDTPLV EQGKESEDVI QKKDDAMATN DELPDHTGIS IEEIPYVGLR  120
FDSLQRAQEF YSNYAKRVRF VTRIRNTNFD KTKKELKAAS RVKRITTSGC KARMYVMLDR  180
QKDNWMVSKL ESKHTHTCSA KQAVHYSEYR ELTMHANSRR HRMIDLYDDC RIWVPIYFQA  240
GMRSTQRSES MHAFFGGYLR CKSGLVQFVH EYDNVLGNKE QKELEDDAAD SKGVREYTTS  300
KFREVQHEFR KRGDCLVRGV AQEGDLFRVT VNKQYLLYGE PRSWTYIVKF DLETHKVRCE  360
CNMFGSRGIL CCHCLAVIFY YGLDREPSCY VIPRWSKNVQ QKHTFIKSSQ NEKSKLLDYR  420
ANLGSRRVPT TQNSTRDPTL GEFDIQGPSK VSTKGRLRLK RLGSELDTSI KKSMRRKKKN  480
PPPEVNQAMN PDIVGGYAGR ANESQEHGGF LLLLNSFRPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.A0MWV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020966945.1	1e-162	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445E201	0.0	A0A445E201_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17996	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-20	FAR1-related sequence 5