PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.A68I5

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 460aa MW: 52845.9 Da PI: 9.042

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.A68I5	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.1	1.2e-17	39	125	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+ +++k+ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k + w ++k++l+H+H+++p Aradu.A68I5 39 KFYRNYAKVAGFSTRVWSTNKK--GNEIKNKLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHALKdVDAWIISKVVLDHSHPCCP 125 6*************998877..888**********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-15	39	125	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.137	288	324	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-5	289	321	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.1E-4	299	326	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEVGMT FTTLEDAGKF YRNYAKVAGF STRVWSTNKK 60 GNEIKNKLIT CSREGKWKSK ISPTEKTNPT AGLNCPARIY IHALKDVDAW IISKVVLDHS 120 HPCCPSKAEM LKQHRELSMS IRRTIENNEE ADLYEDRHIW VPIYLDHHFW AGMRSTQRSE 180 SMHSFFNKFI TQNSSLIQFV KQYDNCLESR EQAERESDAA DFHTVIPCAT KSSIEAQFQD 240 VYTHQKFREV QAQFRGKANC ITRLTNSALG YSVYEVGEQV SSSIFNKFVV TYDSVAAEIK 300 CQCLLFESRG ILCRHALSVL SFEQVSQVSP RYILERGSKK VKRRHTHIKS SHDEPLMEPR 360 SKSQKEWDIF FIHEDTNLES VNKLQSPPRI RTRGRPKNRL GSKLDKQIAN AAKKKKMKVL 420 SKINLFDTAS VVHSNNRQYQ GHVMNYQFTV PAVVDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MDHSTSDCQL NPGEVDYEFE SNEVPEVGMT FTTLEDAGKF YRNYAKVAGF STRVWSTNKK  60
GNEIKNKLIT CSREGKWKSK ISPTEKTNPT AGLNCPARIY IHALKDVDAW IISKVVLDHS  120
HPCCPSKAEM LKQHRELSMS IRRTIENNEE ADLYEDRHIW VPIYLDHHFW AGMRSTQRSE  180
SMHSFFNKFI TQNSSLIQFV KQYDNCLESR EQAERESDAA DFHTVIPCAT KSSIEAQFQD  240
VYTHQKFREV QAQFRGKANC ITRLTNSALG YSVYEVGEQV SSSIFNKFVV TYDSVAAEIK  300
CQCLLFESRG ILCRHALSVL SFEQVSQVSP RYILERGSKK VKRRHTHIKS SHDEPLMEPR  360
SKSQKEWDIF FIHEDTNLES VNKLQSPPRI RTRGRPKNRL GSKLDKQIAN AAKKKKMKVL  420
SKINLFDTAS VVHSNNRQYQ GHVMNYQFTV PAVVDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.A68I5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	1e-177	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-32	far-red elongated hypocotyls 3