PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.A7K6D
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 259aa    MW: 29302.2 Da    PI: 10.9463
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.A7K6DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.3e-1470115248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g WT++ d  l  +v++   + W+ Ia+ +g gR +kqc++rw+++l
      Aradu.A7K6D  70 GQWTPDQDMTLEALVNENKLKKWSQIAKLLG-GRNGKQCRERWHNHL 115
                      79*****************************.*************97 PP
2Myb_DNA-binding54.42.8e-17121166147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+WT  Ed +l++a+k+ Gg+ W+ I+++++ gRt++++k+rw++ 
      Aradu.A7K6D 121 KGPWTWKEDMILIKAHKEAGGNKWAEISKRLP-GRTDNSIKNRWNTI 166
                      79******************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.19E-961111IPR009057Homeodomain-like
PROSITE profilePS5129416.40964115IPR017930Myb domain
SMARTSM007172.9E-1268117IPR001005SANT/Myb domain
PfamPF002495.6E-1370115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2470122IPR009057Homeodomain-like
CDDcd001673.05E-1172115No hitNo description
SuperFamilySSF466895.72E-2895170IPR009057Homeodomain-like
PROSITE profilePS5129424.27116171IPR017930Myb domain
SMARTSM007179.3E-16120169IPR001005SANT/Myb domain
PfamPF002492.3E-15121166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-23123168IPR009057Homeodomain-like
CDDcd001672.04E-13123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNVANGDRVV IWDFSNKTVT TTTTTHHAAP LLVTEKDPRA NANARPRRRN HIRSQRANAN  60
APPTGNHIHG QWTPDQDMTL EALVNENKLK KWSQIAKLLG GRNGKQCRER WHNHLQPNLK  120
KGPWTWKEDM ILIKAHKEAG GNKWAEISKR LPGRTDNSIK NRWNTIKRSR PTKKYKFIKP  180
NNNNNFDGSK MLKAYIDAVA AAQAEVATLS KSKSKNDSNK NKGKARVKID LNSIPLEFPN  240
DDVINIHGSD VGGEYGNWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-32681726110B-MYB
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.A7K6D
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015966270.10.0transcription factor MYB118-like
SwissprotQ9LVW46e-40MY118_ARATH; Transcription factor MYB118
TrEMBLA0A444YZ431e-161A0A444YZ43_ARAHY; Uncharacterized protein
STRINGGLYMA05G08761.11e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143361018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-41myb domain protein 118
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]