PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.A95T0
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 533aa    MW: 61591.7 Da    PI: 9.8621
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.A95T0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.35.2e-1878164191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++  ++ei+++  +Cs+egk +++ +    +++t+ +   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.A95T0  78 KFYRNYAKAAGFSTRVRSTNRK--ENEIKNQLITCSREGKWKSKISL---TEKTNLTAGLNCPARIYIHSLKeVGAWIISKVVLDHSHPCCP 164
                  6****************98887..7779**************99887...89999*************988879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1578164IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.025318354IPR007527Zinc finger, SWIM-type
PfamPF044345.8E-5318351IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4329356IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MIQPQIVSWI RAKWIMNLNI TKFLRCSGVD QNFLGVFLEK PLSVLDDQFL PILPLSVVDD  60
QFVPKVRMTF TTLEDAGKFY RNYAKAAGFS TRVRSTNRKE NEIKNQLITC SREGKWKSKI  120
SLTEKTNLTA GLNCPARIYI HSLKEVGAWI ISKVVLDHSH PCCPNKAEML KQHRELSMSI  180
RHLYEDRHIW VPIYLDHHLW AGMKSTQRSE SMHSFFNKFI TRNSSLIQFV KQYDNCLESR  240
EQAERESDAA DFHTVIPCAT KSSIEAQFQD VYTHQKFREV QAQFRGKANC ITRLTNSALC  300
YSVYEVGEQV SSSIFNKFVV TYDSVAVKVK CQCLLFESRG ILCRHALSVL SFEQVSQVSP  360
RYILKRWNKK VKRRHTHIKS SHDEPLLEPR SKRFDELVFH SQNVCKFASE SEELTAILYR  420
AYDTIMVEME ELKAKRKETS SLSHEDANLE SVNELQSPPR IRTRERPKNR LGSKLDKHIK  480
NASKKKKTKA LNEIKLNLFD AGSVVYSNSS QYQGRVMNYQ FRVPAAADNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.A95T0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445B3W80.0A0A445B3W8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-34far-red elongated hypocotyls 3