PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.A984U
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 481aa    MW: 54699.9 Da    PI: 8.4588
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.A984UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.43.1e-1559145191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk + Fs+r++ ++++   +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.A984U  59 KFYRSYAKAADFSTRVRCTNRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCSARIYIHTLKdVGAWIISKVVLDHSHPCCP 145
                  6***************998776..8889***********99998776...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1259145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198274310IPR007527Zinc finger, SWIM-type
PfamPF044346.6E-5283307IPR007527Zinc finger, SWIM-type
SMARTSM005753.5E-4285312IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDHSNEDCQL NPGEVDYEFE SNEVPEVYYI RYDWPLSVVD DELVPKVGMT FTTLEDAEKF  60
YRSYAKAADF STRVRCTNRK GNEIKNQLIT CSREEKWKSK ISPTEKTNPT AGLNCSARIY  120
IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNEE AAHKGARAYI  180
HFLTSTSPGT ARLFSSEQAE RESDAVDFHT VVPCATKSSI EAQFQDAYTH AKFWEVQAQF  240
KGKANCITRL KNSALGYSIY EVGEQVSSSI FNKFAVTYDS VAAEVKCQCL LFELRGILCR  300
HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR HTHIKSSHDE PLMEPRSKRF DQLVFQFASE  360
SEELTAIMHR AYDNVMAEME ALKAKRKGTS SLSHEDANLE FVNELQSPPR IRTRGRPKNR  420
LGSKLEKQIA NATKKKKTKV LSEINLFDAA SAAHSNSSQY QVHVMNYQFR VPAAGDNSLG  480
V
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.A984U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A2R80.0A0A445A2R8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.11e-15FAR1-related sequence 4