PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.AF61Z

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 115aa MW: 12736.1 Da PI: 6.2457

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.AF61Z	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23	2.5e-07	51	100	1	53
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53 kfY++YAk +GFs+r++ ++++ +ei+++ +C ++ +k++ k + Aradu.AF61Z 51 KFYRNYAKAAGFSTRVRGTNRK--GNEIKNQLITCCAGSFTPLLSKQS-KDAQ 100 6***************998877..778999999999988887766662.3222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-4	51	95	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFK SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA 60 GFSTRVRGTN RKGNEIKNQL ITCCAGSFTP LLSKQSKDAQ TAQGTKHVHS SYDRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.AF61Z

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	5e-58	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020989500.1	3e-49	uncharacterized protein LOC110276745
Refseq	XP_020997160.1	1e-48	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020997362.1	2e-48	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444ZDD6	2e-61	A0A444ZDD6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	5e-07	FAR1-related sequence 8