PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.B0TFK
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 327aa    MW: 35010.7 Da    PI: 6.3158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.B0TFKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-084892345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e d+ + +a   ++ +   +W++Ia+ +  g+tl+++k ++ 
      Aradu.B0TFK 48 EWSFEQDKAFENALGTYPEDdpdRWEKIAADVT-GKTLEEVKQHYE 92
                     7*******************************9.**********95 PP
2Myb_DNA-binding43.66.8e-14159203347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      Aradu.B0TFK 159 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 203
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.8564499IPR017884SANT domain
SMARTSM007171.3E-84597IPR001005SANT/Myb domain
SuperFamilySSF466894.45E-1147103IPR009057Homeodomain-like
PfamPF002496.1E-64892IPR001005SANT/Myb domain
CDDcd001672.44E-74895No hitNo description
PROSITE profilePS5129417.61151208IPR017930Myb domain
SuperFamilySSF466891.05E-16154209IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-17156206IPR006447Myb domain, plants
SMARTSM007174.5E-11156206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-11159202IPR009057Homeodomain-like
CDDcd001671.72E-10159204No hitNo description
PfamPF002498.5E-12159203IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
GDYMLISNHS EPTVVLLWRF LAFSVGSGSE LYSVGQHMAG DEVGSSSEWS FEQDKAFENA  60
LGTYPEDDPD RWEKIAADVT GKTLEEVKQH YELLVDDVNL IESGRVTLPA YNSTSECSTG  120
NASDEGGGKK GGQPWNSNSE SNNGSKSSRS DQERRKGIAW TEDEHRLFLL GLEKYGKGDW  180
RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVNNGDV SAPQGPITGQ  240
TNGSAGNSTG KSPKQGPPTP TGPPTVGLFG APTIGQPIGG GPLVSAVGTP VNLTPPAHMA  300
YGVRAPVPGA PMNMGPVAYP MPPTSHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1944114676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.B0TFK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358752e-75AC235875.2 Glycine max clone GM_WBb0144J22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957042.10.0transcription factor SRM1
RefseqXP_015957043.10.0transcription factor SRM1
RefseqXP_025690592.10.0transcription factor SRM1
RefseqXP_025690593.10.0transcription factor SRM1
RefseqXP_029153073.10.0transcription factor SRM1
RefseqXP_029153074.10.0transcription factor SRM1
RefseqXP_029153075.10.0transcription factor SRM1
SwissprotQ9FNN61e-113SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A444ZVJ40.0A0A444ZVJ4_ARAHY; Uncharacterized protein
STRINGXP_007153178.11e-163(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-106MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]