PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.B3DE0

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 296aa MW: 32569.9 Da PI: 8.7441

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.B3DE0	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.1e-09	27	64	8	47
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 E++++++a +++ + Wk+I + +g +t q++s+ qky Aradu.B3DE0 27 EHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 64 9**********77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	1.0E-13	26	67	IPR006447	Myb domain, plants
CDD	cd00167	3.47E-5	27	65	No hit	No description
Pfam	PF00249	5.3E-7	27	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.44E-11	27	70	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MVSVNPNPAQ GFYFFDPSSS NMGLPGEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH 60 AQKYFLKVQK NGTSEHVPPP RPKRKASHPY PQKAPKSAPT ASHVTGPLQS SSAFIEPAYI 120 YSPDSSSVLG TPVTSVPLSS WNYNTIPPSN VPPSNVPPAT KDDMGLAGAG QAVPLTCCYS 180 SSNENTPPTW PSNNGFEQRN QTKPIKVMPD FAQVYSFIGS VFDPNSTNHL QRLKQMDPIN 240 METVLLLMRN LSMNLMSPEF EDHKRLLSSY GANPEEAKFV NPCSKLLKSE SAVLTA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.B3DE0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015947786.1	0.0	protein REVEILLE 5 isoform X2
Swissprot	C0SVG5	7e-90	RVE5_ARATH; Protein REVEILLE 5
TrEMBL	A0A445EI99	0.0	A0A445EI99_ARAHY; Uncharacterized protein
STRING	GLYMA16G03640.1	1e-166	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1119	33	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.1	5e-82	MYB_related family protein

Publications ? help Back to Top
Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]