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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aradu.B7ZN8 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 186aa MW: 21707.6 Da PI: 7.567 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 54.6 | 3.7e-17 | 52 | 116 | 2 | 68 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68
fYn+YA++vGF vr+sk ++s+ +++++ r fvC+keg+r ++k++ + r+raet +gCka+++
Aradu.B7ZN8 52 FYNAYATSVGFIVRVSKLSRSRIDNSTIGRIFVCNKEGYRMTDKRE--NVIRQRAETMVGCKAMIMG 116
9*****************************************9988..9999************985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 9.4E-15 | 52 | 115 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 186 aa Download sequence Send to blast |
MFLSQSFENL QELTAGKVAA NLESPRSRIY RNSPVEPYVG QEFESEVEAH VFYNAYATSV 60 GFIVRVSKLS RSRIDNSTIG RIFVCNKEGY RMTDKRENVI RQRAETMVGC KAMIMGEWDR 120 IRELNQQLTA EKKRSVTYKR HLEVEHIDVD EYNESLLKKI QHIVYNVKEM ESKEEQSQLN 180 FQSATL |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Aradu.B7ZN8 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015942787.1 | 1e-116 | protein FAR1-RELATED SEQUENCE 1-like | ||||
| TrEMBL | A0A445BPF8 | 1e-123 | A0A445BPF8_ARAHY; Uncharacterized protein | ||||
| STRING | XP_007131945.1 | 4e-63 | (Phaseolus vulgaris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF2453 | 30 | 72 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G59470.2 | 2e-60 | FAR1 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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