PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.BBG0S

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 871aa MW: 96462.8 Da PI: 4.8789

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.BBG0S	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.7e-29	579	629	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Aradu.BBG0S 579 EKNFSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKINKV 629 7999*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.234	561	649	IPR003035	RWP-RK domain
Pfam	PF02042	8.8E-27	582	629	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-20	780	866	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-22	782	865	No hit	No description
PROSITE profile	PS51745	18.334	785	867	IPR000270	PB1 domain
SMART	SM00666	5.0E-19	785	867	IPR000270	PB1 domain
CDD	cd06407	1.10E-29	786	864	No hit	No description
Pfam	PF00564	2.6E-15	786	866	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MEDQFFSEGE GIGYWTPPGA QFDGPSKIDN GIKNLVSEEM LDNLPDLMNF DNLAGWGNIP 60 SVTDHNLDNG ISSLASMQYS PPDAFSLVEQ DNDPYFMTKD CGNYNATETS LGFDEKAVLQ 120 QLETQLGLSE DANDINNING SLQELSAADM GNCLVPRPFA WSLDERMLRA MDLFKESVGD 180 GILTQVWAPM KHGNDFILST SEQPYLLDHM LAGYRDVSRQ FTFSAEDKPG SFLGLPGRVF 240 ISQIPEWTSN VGYYNKSEYL RVEHAINHEV RGSIAVPIID TLAEPPCCAV LELVTTKEKT 300 DFDKELEIVS SALQLVNLRT TTPPRLMSQC LSNNKRAALT EIIDVLRAVC HAHRLPLALT 360 WIPCYYSEGV GDEASRIRIK DGGKIPGEKT VLCIEESACY VNDIVVGGFV HACVEHYLEE 420 GQGVAGKALQ SNRPFFCPDV KAYNISDYPL VHHARKYKLN AAVAVRLRSI HTNDDDYIIE 480 FFLPVNMNGS EEQQLLLDNL SDTVQRMCQS LRSVSDAELY GVEGSQVQFS KEEGSHMAPD 540 GDHDSVQPMS MTNNETEAAH NQAMDGSRKQ TEKKKSSVEK NFSLSVLQQY FSGSLKDAAK 600 SLGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL DSVKGVEGGL EFDPYKGGFM 660 PGGSSNQEIN AHKSSLFGKK CSVKYPDPAS GSKDSKPIAM DDGGLQQEPF PVSILESSWC 720 DIAYHSPNTL VADEMADKLG EHHNPTTSSM SDSSNGSGSI LRGSRKFEKR KHLKAKSPCV 780 GSGSKITVKA VYKEDMIRFK FDPAAGCLQL YEEVATRFKL QIGSFQLKYL DDDEEWVMMV 840 TDSDLKECIE ILDDLGTRAV KFLVSETCLV V

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MEDQFFSEGE GIGYWTPPGA QFDGPSKIDN GIKNLVSEEM LDNLPDLMNF DNLAGWGNIP  60
SVTDHNLDNG ISSLASMQYS PPDAFSLVEQ DNDPYFMTKD CGNYNATETS LGFDEKAVLQ  120
QLETQLGLSE DANDINNING SLQELSAADM GNCLVPRPFA WSLDERMLRA MDLFKESVGD  180
GILTQVWAPM KHGNDFILST SEQPYLLDHM LAGYRDVSRQ FTFSAEDKPG SFLGLPGRVF  240
ISQIPEWTSN VGYYNKSEYL RVEHAINHEV RGSIAVPIID TLAEPPCCAV LELVTTKEKT  300
DFDKELEIVS SALQLVNLRT TTPPRLMSQC LSNNKRAALT EIIDVLRAVC HAHRLPLALT  360
WIPCYYSEGV GDEASRIRIK DGGKIPGEKT VLCIEESACY VNDIVVGGFV HACVEHYLEE  420
GQGVAGKALQ SNRPFFCPDV KAYNISDYPL VHHARKYKLN AAVAVRLRSI HTNDDDYIIE  480
FFLPVNMNGS EEQQLLLDNL SDTVQRMCQS LRSVSDAELY GVEGSQVQFS KEEGSHMAPD  540
GDHDSVQPMS MTNNETEAAH NQAMDGSRKQ TEKKKSSVEK NFSLSVLQQY FSGSLKDAAK  600
SLGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL DSVKGVEGGL EFDPYKGGFM  660
PGGSSNQEIN AHKSSLFGKK CSVKYPDPAS GSKDSKPIAM DDGGLQQEPF PVSILESSWC  720
DIAYHSPNTL VADEMADKLG EHHNPTTSSM SDSSNGSGSI LRGSRKFEKR KHLKAKSPCV  780
GSGSKITVKA VYKEDMIRFK FDPAAGCLQL YEEVATRFKL QIGSFQLKYL DDDEEWVMMV  840
TDSDLKECIE ILDDLGTRAV KFLVSETCLV V

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.BBG0S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020993042.1	0.0	LOW QUALITY PROTEIN: protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A445E3N8	0.0	A0A445E3N8_ARAHY; Uncharacterized protein
STRING	GLYMA12G05390.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]