PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.BS3JU

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 300aa MW: 34126.3 Da PI: 8.4832

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.BS3JU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.1	1.9e-32	60	200	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i+ ++P++Lp v ++ +fF++ +k+y+tg+rk+r+++ + +W+ Aradu.BS3JU 60 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdadgsETRWH 155 799*********9.99*99984443333332222333336******.555555677**************744446555788 PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+++v+ +g+l+g kk+Lv+y ++++k+ekt+Wvmh+y+l Aradu.BS3JU 156 KTGKTRPVYI-SGKLKGYKKILVLYtnYKKQRKPEKTNWVMHQYHL 200 ********.999*******5435888899*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-37	55	219	IPR003441	NAC domain
PROSITE profile	PS51005	32.398	60	219	IPR003441	NAC domain
Pfam	PF02365	1.6E-15	61	200	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MQEEIMTQCN SNNDYPENNH STIVERNKDS LISRTCPSCG HHIKCQQDHQ GAGIHDLPGL 60 PAGVKFDPTD QEILEHLEAK VRSDIHKLHP LIDEFIPTLE GENGICCTHP EKLPGVGKDG 120 LIRHFFHRPS KAYTTGTRKR RKVHTDADGS ETRWHKTGKT RPVYISGKLK GYKKILVLYT 180 NYKKQRKPEK TNWVMHQYHL GNNEEEKEGE LVVSKVFYQT QPRQCAGSLL IKDSSSFPAK 240 LKDQGGVHHH EVTNNHKNNG FVEYYNASFI SFAQGEQQHR SNNPTLISHF PAHDGAPFIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.BS3JU

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015936303.1	0.0	NAC domain-containing protein 73
Refseq	XP_020985037.1	0.0	NAC domain-containing protein 73
Refseq	XP_020985038.1	0.0	NAC domain-containing protein 73
Refseq	XP_020985039.1	0.0	NAC domain-containing protein 73
Refseq	XP_020985040.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-116	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A445BXH8	0.0	A0A445BXH8_ARAHY; Uncharacterized protein
STRING	XP_004487194.1	1e-168	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-105	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]