PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.BU6G6

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 160aa MW: 17407.5 Da PI: 10.9152

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.BU6G6	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.6	6.9e-34	51	105	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Aradu.BU6G6 51 KPRLKWTPDLHARFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 105 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.812	48	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-31	49	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-17	50	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-23	51	106	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-10	53	104	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
GGRMYHHHHQ GKNIHSSSSR MAMSSERHMF LQAAGNGSGG DSGLVLSTDA KPRLKWTPDL 60 HARFIEAVHQ LGGADKATPK TVMKLMGIPG LTLYHLKSHL QKYRLSKNLQ GQSNNNVPHK 120 ISASSVSTGE RPSESNGTHN HMNNNTLNTI PSSPQSSNNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-22	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-22	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-22	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-22	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-22	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-22	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-22	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-22	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-22	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-22	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-22	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-22	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.BU6G6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093552	5e-65	BT093552.1 Soybean clone JCVI-FLGm-24O19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020992819.1	1e-110	myb-related protein 2 isoform X2
Refseq	XP_025683759.1	1e-110	myb-related protein 2 isoform X2
Swissprot	Q9FK47	5e-55	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A445E545	1e-109	A0A445E545_ARAHY; Uncharacterized protein
STRING	AES67068	2e-72	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	1e-51	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]