PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.BW4Q6
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 274aa    MW: 31407 Da    PI: 10.3115
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.BW4Q6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.98.1e-191197191
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                 kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.BW4Q6 11 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 97
                 6****************98887..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-161197IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.174115153IPR007527Zinc finger, SWIM-type
PfamPF044346.0E-5124150IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4128155IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTFTTLEDTG KFYRNYAKAA GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN  60
PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA ETLKQHRELS MSIRRTIENN  120
EEAVAAEVKC QCLLFESRGI LCRHALSVLS FEQVSQVSPR YILERWSKKV KRRHTHVKSS  180
HDEPLMEPRS KRFDQLVFRS QNICEFASKS EELTAILHRA YDNVMAEMES LKAKRKGTSS  240
LSHEDANLES VNELQSPPRI RTRGRPKNRI DKPV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.BW4Q6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-100protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020993575.11e-100protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445BF990.0A0A445BF99_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-11far-red elongated hypocotyls 3