PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.BWW57
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 194aa    MW: 22011.9 Da    PI: 10.4305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.BWW57genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.8e-101351148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G +       +++  R++k+c++rw +yl
      Aradu.BWW57 13 RGLWSPEEDEKLLRYITTHGHK-------RLQ--RCGKSCRLRWINYL 51
                     788*****************88.......887..************97 PP
2Myb_DNA-binding55.21.6e-1757100146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++
      Aradu.BWW57  57 RGSFTLEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 100
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-17554IPR009057Homeodomain-like
PROSITE profilePS5129411.478851IPR017930Myb domain
SuperFamilySSF466894.39E-251098IPR009057Homeodomain-like
SMARTSM007176.2E-71253IPR001005SANT/Myb domain
PfamPF002496.8E-81351IPR001005SANT/Myb domain
PROSITE profilePS5129425.92152106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2655107IPR009057Homeodomain-like
SMARTSM007177.0E-1656104IPR001005SANT/Myb domain
PfamPF002491.0E-1557100IPR001005SANT/Myb domain
CDDcd001675.16E-125999No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGHRCCTKQK IKRGLWSPEE DEKLLRYITT HGHKRLQRCG KSCRLRWINY LRPDLKRGSF  60
TLEEEQIIID IHRILGNRWA QIAKHLPGRT DNEVKNFWNS CIKKKLISQG LDPQTHTLLS  120
SHRRITTSSS SNFSNNNNDS FLIITSNMPN SVNNNAPIIE TSQGLSSSSS LPTNNQAQPS  180
VVQAPSSIVT SSDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30131067108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.BWW57
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015932233.11e-119transcription factor MYB8 isoform X1
RefseqXP_020983400.11e-119transcription factor MYB8 isoform X2
RefseqXP_020983401.11e-119transcription factor MYB8 isoform X3
SwissprotQ8LPH61e-59MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A445CEX11e-139A0A445CEX1_ARAHY; Uncharacterized protein
STRINGGLYMA08G17371.14e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-75myb domain protein 67