PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C0Q0F
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 371aa    MW: 42277.9 Da    PI: 4.6756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C0Q0FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07198246348
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 
                       W+++E +++   +++  ++    +W+++a++++ g+t++q+++r+q +l
      Aradu.C0Q0F 198 VWSEDENKQFEIIIAECLPEemqnRWEAVAACLP-GKTPEQIQERFQELL 246
                      6999999999888877776677778*********.************875 PP
2Myb_DNA-binding42.91.1e-13311355348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT++E el++++ k+lG + Wk+I++   k+Rt+kq++s+ qk+l
      Aradu.C0Q0F 311 HWTQQEKELFLRGYKELGRK-WKRISEDYVKTRTEKQVISHAQKVL 355
                      6*****************99.**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.7E-5195248IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-7197247IPR009057Homeodomain-like
PfamPF002492.1E-6198246IPR001005SANT/Myb domain
PROSITE profilePS500907.108199246IPR017877Myb-like domain
CDDcd001678.13E-7199246No hitNo description
Gene3DG3DSA:1.10.10.601.4E-6209247IPR009057Homeodomain-like
SuperFamilySSF466898.22E-11304357IPR009057Homeodomain-like
PROSITE profilePS5129416.648304359IPR017930Myb domain
TIGRFAMsTIGR015571.5E-10307354IPR006447Myb domain, plants
SMARTSM007171.0E-10308357IPR001005SANT/Myb domain
PfamPF002495.8E-11311355IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-9311357IPR009057Homeodomain-like
CDDcd001671.12E-7312355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSEEEFDPFS IMKLLEVPLP DAELFAADVG SSQFQSPSSS NFPANLPQPQ FAVDLCGYQQ  60
PQAQPETVWS GDENKEFDMG APQFQWPSEF QSLPLHHPVW TGDENHNLAA NFAANVGGNQ  120
QPQLQLPPLH EFPADVCGYQ QPQAQPETVW SGDENKEFDM GAPQFQWPSE FQSLPLHHPV  180
WTGDENHNLA ANAQPEPVWS EDENKQFEII IAECLPEEMQ NRWEAVAACL PGKTPEQIQE  240
RFQELLTDIN LIHKSYSNLH HTSIAPAAPH NTLERNPLSL PGTSEQNQPA NTNIIEHQPL  300
TKTTERKKTV HWTQQEKELF LRGYKELGRK WKRISEDYVK TRTEKQVISH AQKVLKKLGE  360
TNRKNNIRDE S
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.C0Q0F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025616409.11e-159uncharacterized protein LOC112708481
TrEMBLA0A444XWT51e-113A0A444XWT5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2080624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-20MYB family protein