PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C17BW
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 259aa    MW: 29349.8 Da    PI: 5.6795
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C17BWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.34e-116387125
                 --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                 ++++ C +++rtG+C+yG+ C+F+H
  Aradu.C17BW 63 PGEADCIYYLRTGFCSYGSHCRFSH 87
                 57899******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.2E-56289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1836290IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-86487IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-66591IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-56887IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEWSCTGDPA RVPDLIKGRS GLEFDSKENV RCCEVCVILI LKNTEVVSQK GLGAAKKFYP  60
QRPGEADCIY YLRTGFCSYG SHCRFSHLHD RVEIQFHCVR PMDRYGRLSE DSQPDPAVGT  120
VARAREWEYL EPIGQSLCQV NLIQIPNTDR ASVEAANPIE LHCEPLRSLY SVESCVFFAE  180
DLSCFACLFL IKVKDLLSWL DLPVSVIVRC VELWWPVSIA KQRNIFGGCV LNYVGFDLLN  240
AISLQSVYTT PEFVNYCSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.C17BW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A444YR439e-40A0A444YR43_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.21e-11C3H family protein