PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C2BM8
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 249aa    MW: 28459.7 Da    PI: 9.0856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C2BM8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.2e-064867120
                 EEETTTTEEESSHHHHHHHH CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                 + C++C+k+F+r  n++ H+
  Aradu.C2BM8 48 FACSICNKTFNRYNNMQMHM 67
                 78*****************9 PP
2zf-C2H216.62.2e-05132154123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk+F  k + ++H +++
  Aradu.C2BM8 132 FMCRKCGKTFAVKGDWRTHEKNC 154
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.71E-63071No hitNo description
PROSITE profilePS5015710.5124875IPR007087Zinc finger, C2H2
SMARTSM003550.0814870IPR015880Zinc finger, C2H2-like
PfamPF128741.3E-44867No hitNo description
Gene3DG3DSA:3.30.160.602.6E-64867IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SMARTSM0035519095127IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.65E-6118152No hitNo description
Gene3DG3DSA:3.30.160.605.6E-6128152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035535132152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTVALHIGLP TNNTVGVVAA DDDEKKKEEN KRFWIPSPSQ ILVGPMQFAC SICNKTFNRY  60
NNMQMHMWGH GSEFRKGPDS LRGTQPAAML RLPCYCCAQG CKNNINHPRA KPLKDFRTLQ  120
THYKRKHGTK PFMCRKCGKT FAVKGDWRTH EKNCGKLWYC TCGSDFKHKR SLKDHIRSFG  180
KGHSPHPSLE GFEDEKECIT TGSDEDELNN KKFSEILMLV EHENIGSECM QNVKPKMSLS  240
YETSKNITI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.C2BM8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016172058.11e-150zinc finger protein WIP3
RefseqXP_020984904.11e-152zinc finger protein WIP3-like
RefseqXP_025673258.11e-150zinc finger protein WIP3
SwissprotQ9SGD11e-114ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A444Y7A91e-149A0A444Y7A9_ARAHY; Uncharacterized protein
STRINGXP_007132422.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-116WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]