PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C2FSZ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 269aa    MW: 30947.8 Da    PI: 6.0979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C2FSZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-142067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W  +ar  g+ R++k+c++rw +yl
      Aradu.C2FSZ 20 KGLWSPEEDEKLMRYMMNNGQGCWGEVARNAGLQRCGKSCRLRWINYL 67
                     678*******************************************97 PP
2Myb_DNA-binding49.78.4e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++
      Aradu.C2FSZ  73 RGAFSPQEQQLIIHLHSLLGNR-WSQIAAQLP-GRTDNEIKNFWNS 116
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-231270IPR009057Homeodomain-like
PROSITE profilePS5129415.3861567IPR017930Myb domain
SuperFamilySSF466894.69E-2818114IPR009057Homeodomain-like
SMARTSM007177.1E-111969IPR001005SANT/Myb domain
PfamPF002491.2E-132067IPR001005SANT/Myb domain
CDDcd001677.48E-92367No hitNo description
PROSITE profilePS5129425.21768122IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2571121IPR009057Homeodomain-like
SMARTSM007175.2E-1572120IPR001005SANT/Myb domain
PfamPF002498.8E-1573116IPR001005SANT/Myb domain
CDDcd001677.60E-1075115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMSKDKEEEK KNKSKNKLRK GLWSPEEDEK LMRYMMNNGQ GCWGEVARNA GLQRCGKSCR  60
LRWINYLRPD LKRGAFSPQE QQLIIHLHSL LGNRWSQIAA QLPGRTDNEI KNFWNSTIKK  120
RCITITSSST SQNTSESYSS WLEPHDHHNN MEGFTMMPMF SCSSSQSPSI IIDEHLPMPM  180
ENNNMHAAMG IDKGYFNNNN NNNNNNNMFV PPLLESATTS NVYFDEDVNT LHNKVVSVEE  240
DSLISMEDWE LEDLMIKSVS SPFLDFPLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27181245110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.C2FSZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935386.10.0transcription factor MYB46 isoform X1
RefseqXP_025613861.10.0transcription factor MYB83
SwissprotQ9C6U15e-65MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A445BVQ90.0A0A445BVQ9_ARAHY; Uncharacterized protein
STRINGGLYMA11G14200.22e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-60myb domain protein 46
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]