PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C4WPP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 470aa    MW: 53379.8 Da    PI: 4.9425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C4WPPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-08183231348
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 
                       WT eE + +   ++    +    +W+ +a++++ gRt+ q+++r+qk++
      Aradu.C4WPP 183 VWTWEENKAFESIITSCFQDdiqnRWEDVAARLP-GRTPTQLQERFQKLM 231
                      5***************99999*************.*************86 PP
2Myb_DNA-binding35.32.7e-11297339447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT++E+ l++++ ++ G++ Wk+I+++  k++t+ q+ s+ qk+
      Aradu.C4WPP 297 WTEDEHRLFLRGYQKEGSH-WKRISEYYVKTKTPSQISSHAQKH 339
                      *******************.**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.3E-5180233IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-7183234IPR009057Homeodomain-like
PfamPF002491.4E-5183230IPR001005SANT/Myb domain
PROSITE profilePS500907.584184231IPR017877Myb-like domain
CDDcd001677.61E-6184231No hitNo description
Gene3DG3DSA:1.10.10.601.4E-6184232IPR009057Homeodomain-like
PROSITE profilePS5129413.629289344IPR017930Myb domain
SuperFamilySSF466894.09E-15290345IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-13292343IPR006447Myb domain, plants
SMARTSM007173.2E-4293342IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-7296339IPR009057Homeodomain-like
CDDcd001679.47E-6297340No hitNo description
PfamPF002493.1E-9297339IPR001005SANT/Myb domain
PfamPF122154.6E-16415468IPR024462Glycosyl-hydrolase family 116, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MMNPWNIRDP YDMIDFDADD EAPQFQFEFP PLPEPVWNAD ENNVGEPCAM DVSGNQPPQP  60
SQPQPCAMDV SGNEPPQPVI DDCFPEVIKR TEHYWGSPLS GSQSLQSPSQ SQSRAIDVCG  120
NQPLQSQSQT DIVRTLTDEF FADTCGYPPP QPQPQTQWDT SRNMLKLIPD VGGHQPLQPQ  180
APVWTWEENK AFESIITSCF QDDIQNRWED VAARLPGRTP TQLQERFQKL MNDINTMTIM  240
MEHNPLSIPI NATTPPPPSH PYSTHHHHRE EVVPAAEEEV VPTAQEEAAP TKTGYHWTED  300
EHRLFLRGYQ KEGSHWKRIS EYYVKTKTPS QISSHAQKHF LHQEELAKGK KLRKSIFDFS  360
GLDGNAEGDE NVCHRLIPVC LSRKRTFITK FISLLAAANN IRENPVSGIQ SWVWNLSEPD  420
PALRIVCPQI SPIIPHNYKE SSFPAPVFTF VLNNFGKTTA DVTLLFTWIK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.C4WPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020985525.10.0uncharacterized protein LOC107463192 isoform X1
RefseqXP_020985526.10.0uncharacterized protein LOC107463192 isoform X1
TrEMBLA0A445C1900.0A0A445C190_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2927422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-22MYB family protein