PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.C8CVG

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 368aa MW: 43449.3 Da PI: 9.4689

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.C8CVG	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.7	5.1e-15	27	113	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k +GFs++++++++ ++i+++ vCs+e + + + + + +t+++t +C a + v+ +k g w ++k++l+H H+++p Aradu.C8CVG 27 KFYKHYSKLAGFSTKIRNTTRD--GDKIKNHLIVCSRERRWKLKISP---TLKTNPSTGLNCSAIIYVHIMKdIGLWTISKVVLNHLHPCCP 113 6**************98776..8889*******99998766...999**************989************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-12	27	113	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.013	273	309	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0026	284	311	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MQTSCIVDEK FVPNVGMIFK TLEEARKFYK HYSKLAGFST KIRNTTRDGD KIKNHLIVCS 60 RERRWKLKIS PTLKTNPSTG LNCSAIIYVH IMKDIGLWTI SKVVLNHLHP CCPDHTEMLK 120 RHRELSIFGS PHLIVSVWFA ELYEDRHIWI PVYLDHHFWA GMRSTQRSES MHSFFNKFIT 180 QNSSLRQFVK QYDNCLVSRE QEEREFDAAD FHTVIPCAIK SAMERVYTHE KFREVQAQFR 240 GKVNCITRSM HSTLCFTTYK VIEQVSNSTF NKFVVTYDTV SRDVKCNCLL FESRGILCHH 300 SLSVLSFERV DNVALKYILE CWSKNINRRH RHIKSIHMSL YWSKEVRDLM NWCFGHTIYV 360 NLHPSLKI

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MQTSCIVDEK FVPNVGMIFK TLEEARKFYK HYSKLAGFST KIRNTTRDGD KIKNHLIVCS  60
RERRWKLKIS PTLKTNPSTG LNCSAIIYVH IMKDIGLWTI SKVVLNHLHP CCPDHTEMLK  120
RHRELSIFGS PHLIVSVWFA ELYEDRHIWI PVYLDHHFWA GMRSTQRSES MHSFFNKFIT  180
QNSSLRQFVK QYDNCLVSRE QEEREFDAAD FHTVIPCAIK SAMERVYTHE KFREVQAQFR  240
GKVNCITRSM HSTLCFTTYK VIEQVSNSTF NKFVVTYDTV SRDVKCNCLL FESRGILCHH  300
SLSVLSFERV DNVALKYILE CWSKNINRRH RHIKSIHMSL YWSKEVRDLM NWCFGHTIYV  360
NLHPSLKI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.C8CVG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025678126.1	1e-117	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444ZLV2	1e-175	A0A444ZLV2_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	6e-32	far-red elongated hypocotyls 3