PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.CA8XJ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 572aa    MW: 64663.4 Da    PI: 8.2277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.CA8XJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.7e-15408453454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h ++ErrRR+++N++f +Lr+l+P       +K++Ka+iL  ++eY+k+L
  Aradu.CA8XJ 408 SHVAAERRRREKLNEKFITLRSLVPYV-----TKMDKASILGDTIEYVKQL 453
                  799***********************8.....8*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-548202IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.54E-19403465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.498404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.41E-14407458No hitNo description
Gene3DG3DSA:4.10.280.108.4E-20407465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12408453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-18410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.65488566IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MPSCSRVQSM LQAAVQSLHW TYTIFWQLSP QQRVLRWSDG FYNGEIKVRR TVEAIEANKS  60
NSNNEEASLQ RSNQLRDLYD LLLSDRQGDL IFAADPPATP RPCTALSPED LSESEWYYLM  120
CVSFSFAPGV GLPGKAYARR QHVWLQGANE ADTKTFSRAI LAKSAHVKTV VCIPMLDGVV  180
ELGTTDKVKE DINLIKHIKS FFIGDHHRPQ PKHALSENSA SNPITEEAQL LLDSETATLP  240
QSKLKELVMT EDSSRAGSPD DGSNRLNSAG LELLPPESAA SLELLHGDEY DNNSEAETSH  300
LCTEQEGHTH YSKTVSTILE GSSGHRPDAV CGLLSFQSAF ATWSSRAYNC HQVTVVENPQ  360
RLLKNILFRV PYLHRKQNRH NSNNNSAKTL EQLERTMMPS PQDDLISSHV AAERRRREKL  420
NEKFITLRSL VPYVTKMDKA SILGDTIEYV KQLHEKVKKL EEEDKRRRSG KKRKERAVEV  480
SVIEGEILLE VECMNREGLL LDLMRALKEV GIEVRGVKSS FKGDDERVFV VELRGKVKEN  540
GKRNNNNNKK KKISIMEVKK VLRNIINPHH PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-20620212192Transcription factor MYC3
4rqw_B4e-20620212192Transcription factor MYC3
4rs9_A4e-20620212192Transcription factor MYC3
4yz6_A4e-20620212192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412417ERRRRE
2413418RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.CA8XJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969547.10.0basic helix-loop-helix protein A-like isoform X1
SwissprotE3SXU41e-172BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A445CKS30.0A0A445CKS3_ARAHY; Uncharacterized protein
STRINGGLYMA02G16670.21e-166(Glycine max)
STRINGGLYMA19G33770.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-129bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]