PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.CDM5G

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 195aa MW: 23273.1 Da PI: 4.6828

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.CDM5G	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.7	6e-16	63	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY++YA + F vr ++ ++ +g+i++r+ vC++ g r+ee +k+e+ r +r+ tr a+++ +++k +kw+v ++ +e +Hel+ Aradu.CDM5G 63 RFYKTYAMMHSFAVRLDEVRHD-SDGSIIMRQIVCNRAGIRNEEVEKDERIRDHRPLTRSYFWARIRARLDKkIQKWKVVSFYEERSHELV 152 5**************99998.8999****************9******************9989*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-12	63	152	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MEPSDSDFFA IDSDEEFLTG DDLDFLNNDS EADEDRPQDK RIAELSREDI MQLQFTDEEA 60 VYRFYKTYAM MHSFAVRLDE VRHDSDGSII MRQIVCNRAG IRNEEVEKDE RIRDHRPLTR 120 SYFWARIRAR LDKKIQKWKV VSFYEERSHE LVAPLDVSMM PEYRTFNISD KAQAKNLYDI 180 GIRPVTSWDT WLLKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.CDM5G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020970171.1	1e-107	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025684884.1	1e-107	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444X1I1	1e-103	A0A444X1I1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17158	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-14	FAR1-related sequence 5