PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.CGA52
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 420aa    MW: 48238.2 Da    PI: 9.825
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.CGA52genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.88.8e-1951142191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk + + +   ++++++t++++  +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.CGA52  51 KFYRNYAKVAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKYKISPteKTSTEKTNPTSGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 142
                  6****************98887..8889************999877644667788999************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1651142IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186222258IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-4224255IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4233260IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVDSTSDSQL NQGEVDYEFE SNEVPEALSV VDDQFIPKVG MTFTTLEDAG KFYRNYAKVA  60
GFSTRVRSTN RKGNEIKNQL ITCSREGKWK YKISPTEKTS TEKTNPTSGL NCPARIYIHT  120
LKDVGAWIIS KVVLDHSHPC CPSKAEMLKQ HRELCMSIRR TIENNEEAEA QFQHVYTHQK  180
FRKVQAQFRG KANCITRLTN SALGYSVYEV GEQVFSSIFN KFVVTYDSVA AEVKCQCLLF  240
ESRGILCRHA LSVLSFEQVS QVSPRYILER WSKKVKRRHT HIKSSHDEPL MEPRSKRFDQ  300
LVFRSQNICE FASESEELTA FLHRAYDNVM AEMESLKAKR KVTSSLSHKD ANLESVNELQ  360
SQPRIRTRGR PKNRLGSKLD KQIANATKKK KTKVLSEVKV MFFKFVVIEF IFLVNSLANM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.CGA52
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020993575.11e-165protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445E9M10.0A0A445E9M1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.11e-17FAR1-related sequence 4