PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.CI9FK
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 100aa    MW: 11523.8 Da    PI: 7.7536
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.CI9FKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-101862244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      rWT+ E +l+ +a +++ ++   +W  +a+ +g g++  ++k ++
      Aradu.CI9FK 18 SRWTAKENKLFEKALAEYDKDtadRWQNVAKAVG-GKSVDEVKRHY 62
                     69********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.3331570IPR017884SANT domain
SMARTSM007174.1E-91668IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-131874IPR009057Homeodomain-like
PfamPF002491.3E-81962IPR001005SANT/Myb domain
CDDcd001671.27E-71966No hitNo description
Gene3DG3DSA:1.10.10.602.2E-51966IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASTTLSKQK KPSSESSSRW TAKENKLFEK ALAEYDKDTA DRWQNVAKAV GGKSVDEVKR  60
HYEILLEDLR HIESGHVPIP NYKSTPSTTT NLDEEQRYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-301385376RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.CI9FK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952574.14e-69protein RADIALIS-like 4 isoform X3
RefseqXP_020993063.14e-69protein RADIALIS-like 4 isoform X3
RefseqXP_025642342.14e-69protein RADIALIS-like 4 isoform X2
SwissprotQ1A1737e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445E3H39e-68A0A445E3H3_ARAHY; Uncharacterized protein
STRINGGLYMA12G04680.22e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-34RAD-like 6