PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.D0BMY
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 698aa    MW: 80347.3 Da    PI: 9.4887
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.D0BMYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.84.3e-1981171190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY++YAk  GF  r +++ +   ng+  +r++vC++eg+r+++  + ++++r +r+ tr+ C+a+++ + +    kw+vt +e+ HnH+l 
  Aradu.D0BMY  81 QFYKNYAKVHGFVARCDEKGYD-FNGNLNMRQMVCNREGTRRKKYLEmENRKRDHRPITRVMCQARIRFHYDMkLRKWKVTAFEETHNHDLI 171
                  6**************9998887.9999***************9988867788889***************998799**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1681172IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.829280316IPR007527Zinc finger, SWIM-type
SMARTSM005750.007291318IPR006564Zinc finger, PMZ-type
SuperFamilySSF577563.14E-5419450IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.5E-4423454IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MGSVHKNSTE SSVEFDDLSF EYSGSSEEND INISQKKGTI DEAMKMVDRG DGFGEVEKKL  60
TELTRDDIWG IEHDSVEECV QFYKNYAKVH GFVARCDEKG YDFNGNLNMR QMVCNREGTR  120
RKKYLEMENR KRDHRPITRV MCQARIRFHY DMKLRKWKVT AFEETHNHDL IPPKYIQFVP  180
AYRVMTEADK AQANSLHDYV RQYRTNELLS DFKSLFSSPV LTTCFEDIEK EAANIFTHNM  240
FKEVRNEILE ASKLNVVGHS IDGNKIEVRM NKYQEPAIEY KVRYDRSTNN FACDCRLFES  300
RGIPCSHIFC TMRHDHISTI PNTLIHKRWT KDAKKEYISS LTAEDIESEK IAGVRYGALA  360
TLCFSLCDKA SKHRDDFMEI REDIFGLIMK LHKRHNPNDK LPSTANLVGD PSVVKTKGAP  420
RQTTKTAKAR KCSHCKRIGH TVRRCPKLYG GECSLSSNED KLNTDIDQSS TESNGDTDMS  480
DEETIHQRNK KRSDFFENIQ KKVNKPHVQS TEVQSNQYND NRTEKATAQT KINAPEAAFA  540
DTKKDRISSV EKSKKRKRLD NNRIEKGRKP NEADHEEVPP EIGTYGAISS TKGIESGKMK  600
EREGKSEKRK TEEESFRKRR RKEGEAAAVP SRPARHRSSS HRVTIESRNA REEREPMAEE  660
GSPLLRRRRC GSGPRRGTTP LRQGARRHRQ GSVIAATP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1607621KRKTEEESFRKRRRK
2616620RKRRR
3616622RKRRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.D0BMY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963408.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445EE920.0A0A445EE92_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2933622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-14FAR1-related sequence 5