PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.D3K1L
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 417aa    MW: 47784.2 Da    PI: 8.0284
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.D3K1LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.13.4e-1951137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ ++   +++t+++   +C a++ ++  k  g+w ++k++l+H+H+++p
  Aradu.D3K1L  51 KFYRNYAKAAGFSTRVRSTNRK--RNEIKNQLITCSREGKWKSKISS---TEKTNPTAGLNCPARIYIHTLKdVGTWIISKVVLDHSHPCCP 137
                  6****************98887..5569**************99887...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1651137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186300336IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-4310333IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4311338IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDHSNEDCQL NPGEVDYEFE SNEVLEPLSV VDDELVSKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRSTN RKRNEIKNQL ITCSREGKWK SKISSTEKTN PTAGLNCPAR IYIHTLKDVG  120
TWIISKVVLD HSHPCCPSKA EMLKQHMELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHMVIPC  240
ATKSSIEAQF QDAYTHAKFR EVQAQFREKA NCITRLKNFA LGYSIYEVGE QVSSSIFNKF  300
AVTYDLVAAG VKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKELTAILHC  360
AYDNVMAEME ALKAKRKGTS SLSHEDANLE SVNELQSPPR IRTRGRPKNR LGSKLEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.D3K1L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-166protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.27e-30far-red elongated hypocotyls 3