PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.D6IHD
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 90aa    MW: 10404.9 Da    PI: 9.4681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.D6IHDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.3e-1322863297
                 --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ++k + l++ + ++W v+liy  +++  +l++G  +F+++n+Lk+gD+++F+l+ r+++el  ++f
  Aradu.D6IHD 22 KTKYVNLRN-REKQWPVTLIYYPTRKIAILSAGSVSFARENNLKAGDICIFELVYREGAELDAHIF 86
                 333456555.78******************************************999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.164189IPR003340B3 DNA binding domain
SMARTSM010190.0039889IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-111886IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-111986IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-112086No hitNo description
PfamPF023627.9E-112286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MTYGVLHFIA FQQSSSENTF KKTKYVNLRN REKQWPVTLI YYPTRKIAIL SAGSVSFARE  60
NNLKAGDICI FELVYREGAE LDAHIFLRDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.D6IHD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179830.13e-16B3 domain-containing protein Os03g0619600-like
RefseqXP_029144690.13e-16B3 domain-containing protein REM16-like
TrEMBLA0A444ZT892e-53A0A444ZT89_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1722223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-08related to vernalization1 1