PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.D77RW

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 478aa MW: 54697.6 Da PI: 10.3153

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.D77RW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.4	1.7e-16	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ ++ei+++ +Cs+egk +++ +++t+++ +C a++ ++ k g w ++k++l+ +H+++p Aradu.D77RW 11 KFYRNYAKVAGFSTRVRNTNRK--ENEIKNQLITCSREGKWKSKIYP---TEKTNPTADLNCPARIYIHTLKdVGAWIISKVVLDYSHPCCP 97 6**************98887..7779**********99877...8999**********998879************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-14	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.902	217	250	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.9E-5	222	247	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.1E-4	225	252	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MTFTTLEDAE KFYRNYAKVA GFSTRVRNTN RKENEIKNQL ITCSREGKWK SKIYPTEKTN 60 PTADLNCPAR IYIHTLKDVG AWIISKVVLD YSHPCCPSKA EMLKQQRELS MSIRRTIENN 120 KEAGMRSTQR SESMHSFFNK TARLFNSSNN MIIASEAGSK QRENQMLQIF IRSYRAQPNP 180 QLKLSFKIGK VNCITRLTNS ALGYSVYELN IQQVCGYLRS VAAEIKCQCL LFESRGILCR 240 HALSVLSFEQ VSQVSPRYIL ERWSKKVNRR HTHIKSSHDE PLLEPRSKRF DQLVFRSQNI 300 CEFTSESEEL TAILHRAYDN VMAEVESLKA KRKGTSSLSH EDANLESVNE LQSPPKIRTR 360 GRPKNRLGSK LDKLIANATK KKKSKVLSEI NLFDAASVVH SNSSQYQGHV MNFQFRVPAA 420 GDNSLGIRVY GFRHKASEEK DLRSERFIPC LLPRDVKRSI TTNGLNGKQV QKSEICSD

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MTFTTLEDAE KFYRNYAKVA GFSTRVRNTN RKENEIKNQL ITCSREGKWK SKIYPTEKTN  60
PTADLNCPAR IYIHTLKDVG AWIISKVVLD YSHPCCPSKA EMLKQQRELS MSIRRTIENN  120
KEAGMRSTQR SESMHSFFNK TARLFNSSNN MIIASEAGSK QRENQMLQIF IRSYRAQPNP  180
QLKLSFKIGK VNCITRLTNS ALGYSVYELN IQQVCGYLRS VAAEIKCQCL LFESRGILCR  240
HALSVLSFEQ VSQVSPRYIL ERWSKKVNRR HTHIKSSHDE PLLEPRSKRF DQLVFRSQNI  300
CEFTSESEEL TAILHRAYDN VMAEVESLKA KRKGTSSLSH EDANLESVNE LQSPPKIRTR  360
GRPKNRLGSK LDKLIANATK KKKSKVLSEI NLFDAASVVH SNSSQYQGHV MNFQFRVPAA  420
GDNSLGIRVY GFRHKASEEK DLRSERFIPC LLPRDVKRSI TTNGLNGKQV QKSEICSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.D77RW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	1e-149	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445CUV2	0.0	A0A445CUV2_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-14	far-red elongated hypocotyls 3