PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DAM1C
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 320aa    MW: 36282.6 Da    PI: 9.0969
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DAM1CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF626.6e-202068149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 krienk n q+ f+kR+ g+lKKA+E+  LCda v +ii+ss+gk+y y
  Aradu.DAM1C 20 KRIENKKNCQIAFTKRKDGLLKKANEIKSLCDAGVDLIIYSSSGKVYYY 68
                 79*********************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.9691272IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-221271IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-221377IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-191434IPR002100Transcription factor, MADS-box
PfamPF003198.1E-182168IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-193449IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-194970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MENGGEMIKK IKGRQKREIK RIENKKNCQI AFTKRKDGLL KKANEIKSLC DAGVDLIIYS  60
SSGKVYYYGD SSLKTIKMAL SNEQQPQNSN QLFGYIMEEM SRKDMHNLVK KNDSLVDQLN  120
AEKERAETLS NILKTIKTDN STTNWWDTIG QSCEKNKEFE KILVTLQQTL KNQISLKIVA  180
NQATVTTAAE SVISTFYHSD QTIIQVSPGV IGPYRAHGSM STFSNITFAT GVNPFDATRE  240
FGNQNVPVWY PSYQHQQGYN DLFLYDASNR NGVGRSSGGD DTKNYLYHSN YNYNNNGGGF  300
FGFPYHNNPF NNGYGCERFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-1313104292MEF2 CHIMERA
6bz1_B1e-1313104292MEF2 CHIMERA
6bz1_C1e-1313104292MEF2 CHIMERA
6bz1_D1e-1313104292MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DAM1C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015931297.10.0MADS-box transcription factor 4-like
TrEMBLA0A444YDE30.0A0A444YDE3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1915424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-18AGAMOUS-like 62