PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.DAZ3P

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 464aa MW: 53245.5 Da PI: 8.9986

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.DAZ3P	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.6	1.5e-11	51	129	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ ++ei+++ +Cs+e + +++ + +++t+ + +C a++ ++ ++++l+H+H+++p Aradu.DAZ3P 51 KFYRNYAKAAGFSTRVRSTNRK--KNEIKNQLITCSREERWKSKISP---TEKTNLSAGLNCPARIYIHSL-------KEVVLDHSHPCCP 129 6**************98887..6679******998887766...899*************987.......7899999999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-9	51	129	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.013	300	336	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.3E-4	301	333	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0051	311	338	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MDDSTSDCQL NQGKVDYEFE SNEVPEPLSV VDDQFVSKVG MTFITLEDAE KFYRNYAKAA 60 GFSTRVRSTN RKKNEIKNQL ITCSREERWK SKISPTEKTN LSAGLNCPAR IYIHSLKEVV 120 LDHSHPCCPS KAEMLKQHRE LSMSIRRTIE NNEEAVCCWV YSADLYEDRH IWVPIYLDHH 180 FWAGMRSTQR SESMHSFFNK FITQNSSLIQ FVKQYDNCLG SRQQAERESD AANFHTVIPC 240 ATKSSIEAQF QDVYTHQKFR KVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVSSSIFDKF 300 VVTYDSVAAE LKCQCLLFES RGILCRHTLS VLSFEQVSQV SPRYILERWS KKVKRRHTHI 360 KSSHDEPLLD PGSKRFDELV FSFTKCLRIC IRIGGAECNS APCSPPRIRT RGRPKNRLGS 420 KLDKHIKNAS KKKKTKALNE LNLFDAGSVV HSNSSQYQGC VMTY

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MDDSTSDCQL NQGKVDYEFE SNEVPEPLSV VDDQFVSKVG MTFITLEDAE KFYRNYAKAA  60
GFSTRVRSTN RKKNEIKNQL ITCSREERWK SKISPTEKTN LSAGLNCPAR IYIHSLKEVV  120
LDHSHPCCPS KAEMLKQHRE LSMSIRRTIE NNEEAVCCWV YSADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESMHSFFNK FITQNSSLIQ FVKQYDNCLG SRQQAERESD AANFHTVIPC  240
ATKSSIEAQF QDVYTHQKFR KVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVSSSIFDKF  300
VVTYDSVAAE LKCQCLLFES RGILCRHTLS VLSFEQVSQV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLLD PGSKRFDELV FSFTKCLRIC IRIGGAECNS APCSPPRIRT RGRPKNRLGS  420
KLDKHIKNAS KKKKTKALNE LNLFDAGSVV HSNSSQYQGC VMTY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.DAZ3P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	1e-164	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444ZZ11	0.0	A0A444ZZ11_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-34	far-red elongated hypocotyls 3