PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DI6JM
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 717aa    MW: 79114 Da    PI: 7.6842
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DI6JMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.28.8e-15471509240
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+C+CkkskClk+YCeCfaa+++C+ +C+C+dC Nk 
  Aradu.DI6JM 471 DCKRCKCKKSKCLKLYCECFAARAYCTGNCSCKDCYNKL 509
                  689**********************************85 PP
2TCR51.52e-16552591140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+gCnCk+s ClkkYCeCf+ag+ Cs +C+Ce+CkN+ 
  Aradu.DI6JM 552 RHKRGCNCKQSVCLKKYCECFQAGVGCSLSCRCEGCKNTF 591
                  589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-13470511IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.914471592IPR005172CRC domain
PfamPF036382.6E-10473508IPR005172CRC domain
SMARTSM011141.1E-17552593IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.2E-12554590IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MRQNAISDHT IVLMLDQSAL LPGTFLSLLH ICTGCIFNHR YVKSNPHEVE NATWMLMPRT  60
TLVMDTPERN QINPPFSRVE DSPVFSFINS LSPIKPVKSA QVGQTFSSLS FPSPPRAFTS  120
SNLTCFKESK VLRRHNPFGA SRPGLSSEDG NKFQTSEEAI ADSFHPYNNS RESQGNFHDG  180
ISVVDDSIAL PGEHTDFSAE ILQALNYNNC GNPGSDPGHE ANSLEVFNQG LCQFDPKGQE  240
SECNWDNLIS GDTDFFVFNS PNDAAFKGIM QKPDSHFMSL VPESSIYNGL RDSKLKIEDY  300
RPEPLAITGQ MQDKHCVAMT SKIKEKPDVE LVSVMNRGTR RRCLNFETDS VQRKNSDDNL  360
KSGSLGYEKQ LVSAKRKSSS QQCTMPAVGL HLNAPDKEVI SNDESSCGIH LNVPSCTSVQ  420
IYTSYEHQEP LAIGVDSSNI GPEPAKDNSH ALYSTVNDVS QNSPKKKRHG DCKRCKCKKS  480
KCLKLYCECF AARAYCTGNC SCKDCYNKLV HKDKVIQVRK QIESRNPLAF APKVIAEPEI  540
GNDPNKTPAP ARHKRGCNCK QSVCLKKYCE CFQAGVGCSL SCRCEGCKNT FGRKDGANSI  600
GVEAQLEVEI EVCGKVVEKV SQRIEVQNSD NHPDFVPIST PFPLFSSLSE GKPNTRWSQP  660
PKHSQAVSDQ EMTDVLGGGG RSDRSPMTIK TSSPSGKRIS TSKGDLTLSF PSPNRHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1647358912120Protein lin-54 homolog
5fd3_B4e-1647358912120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463478PKKKRHGDCKRCKCKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DI6JM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957751.10.0protein tesmin/TSO1-like CXC 2 isoform X1
RefseqXP_015957759.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A445ARC50.0A0A445ARC5_ARAHY; Uncharacterized protein
STRINGGLYMA01G44670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.17e-82TESMIN/TSO1-like CXC 2