PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DIN6C
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 424aa    MW: 49440.4 Da    PI: 8.9111
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DIN6CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.45.5e-1928114190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +fY++Y+k+vGF ++++ +++  +++  +++  +C++egkr+++ +     ++t++ t+ +C a++ ++++k+g w ++k+ l+H+H++ 
  Aradu.DIN6C  28 QFYQNYGKRVGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSP---IEKTNPRTNYNCPARISIRLNKEGLWIISKVCLDHSHPCD 114
                  6******************************************9877...999**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1628114IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.73294330IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-5294327IPR007527Zinc finger, SWIM-type
SMARTSM005759.3E-6305332IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MESVLEEQNI EDVPKVGMCF GTIEDANQFY QNYGKRVGFV TKIRFTRRVG KDKVPKNQMI  60
TCNREGKRKS RVSPIEKTNP RTNYNCPARI SIRLNKEGLW IISKVCLDHS HPCDPEMAKL  120
LTRNREMTMH MCRVIERNDE AGVRPSKTYQ VLVGEAGDIY EERHRWVPIF LDNFFWAGMR  180
STQRSESMHS YFDKFINNKS LLIQFVKQYD NCLGWKEQQE READVEDYKS IIPCATNSLI  240
EKQFQGAYTN AKFKEVQKQF RKKANCILHL MKAVSTSKVY SILEDVSTSK ERVYEVNYNA  300
ETKDITCMCQ MFESRGILCR HSLVVLGHER VREIPRRYIL DRWSKLVKRR HSDIKSSHDP  360
SLLNPKTERF DDLCSHSNSV AQFASQTKET SDILHRYLDM AMADCQKHVA NSSSNANELD  420
NLLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DIN6C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025608198.10.0uncharacterized protein LOC112701685
TrEMBLA0A445B5410.0A0A445B541_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-35far-red elongated hypocotyls 3