PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.DL3EU

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 905aa MW: 103819 Da PI: 7.5414

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.DL3EU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68	2.4e-21	113	196	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a+++++++++++w++ ++ leHnH l Aradu.DL3EU 113 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----HMRKETRTGCPAMIRMRLMDSQRWRILEVTLEHNHML 196 5899*************************************9988.....999******************************98 PP
2	FAR1	71.7	1.6e-22	547	631	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a+++++ ++++w+v++++leHnH++ Aradu.DL3EU 547 NYYNSYAKEIGFAIRVKSSWTRRNSKEKRGAVLCCNCEGFKTLKEAN-----SHRKETRTGCLAMIRLRSVESNRWRVDEVKLEHNHSFD 631 69**************************************99888.....999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-18	113	196	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.644	363	399	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.4E-4	371	395	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	374	401	IPR006564	Zinc finger, PMZ-type
Pfam	PF03101	3.8E-20	547	631	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.792	785	823	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.5E-6	797	820	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-5	798	825	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence Send to blast
MMAEVGDHNS NTTTCAAVLN SGKNLDKVLG SLDKDQTSNI VITSRAKRLE PVLMEETAFC 60 CEQLPEGECI EAQKEEDGSL VELDCRNGFS EGRKEFVTPA VGMEFESYDD AYNYYICYAK 120 EVGFRVRVKN SWFKRNSREK YGAVLCCSSQ GFKRIKDVNH MRKETRTGCP AMIRMRLMDS 180 QRWRILEVTL EHNHMLGSKI HKSVKKMGTG TKKKSLPSSN AEVHTVKLYR ALVIDAGGNS 240 SAISNAREDR TLSEFCNRFV HKQTPLKEFL DKYELALHKK HKEEALADIE SRSSTPLLKT 300 RCSFELQLSR MYTRQMFLKF QFEVEEMYSC FGTTQLHVDG PVIIFLVKER VLCEGNRREI 360 RDFEVLYSRT AGEVRCICSC FNFYGYLCRH ALCVLNFNGV EEIPSRYILS RWKKDYKRLH 420 IPDHNTGVPD DIDHSQWSNQ LFRSALQVVE EGTVSVDHYN VALHAIEESL NKIDDGSPNS 480 DQLLEVADEQ NILVNGCGQL FEIDGSEHEN GRDETTVIDG YGGESQGKGY PPPVVGMEFD 540 TYDDAYNYYN SYAKEIGFAI RVKSSWTRRN SKEKRGAVLC CNCEGFKTLK EANSHRKETR 600 TGCLAMIRLR SVESNRWRVD EVKLEHNHSF DPERAQNSKS HKRTDGGSKR KLEPTLDVEV 660 RTIKLYRMPV GDASGYGSPN SNEGGTSTNL NFSRHLKLRK VMEQKRKTEA IDDFKSRDSS 720 PSLRTRYYYE LQLSKLYTNA MFRKVQEEIV MMSSCFGITE SQTNGSTATY MVKERQGEEL 780 VQDAGHVEVT YDKTGAEVRC SCCCFNFKGY LCRHALSILD YNGVEEIPCQ YVLPRWRKDF 840 KRLYVPHLSS DNVDITNPVQ CFDHLYKRAM QVVEEGMISQ AHYMVSWQAF KESLNKIRLV 900 SDKIE

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence Send to blast

MMAEVGDHNS NTTTCAAVLN SGKNLDKVLG SLDKDQTSNI VITSRAKRLE PVLMEETAFC  60
CEQLPEGECI EAQKEEDGSL VELDCRNGFS EGRKEFVTPA VGMEFESYDD AYNYYICYAK  120
EVGFRVRVKN SWFKRNSREK YGAVLCCSSQ GFKRIKDVNH MRKETRTGCP AMIRMRLMDS  180
QRWRILEVTL EHNHMLGSKI HKSVKKMGTG TKKKSLPSSN AEVHTVKLYR ALVIDAGGNS  240
SAISNAREDR TLSEFCNRFV HKQTPLKEFL DKYELALHKK HKEEALADIE SRSSTPLLKT  300
RCSFELQLSR MYTRQMFLKF QFEVEEMYSC FGTTQLHVDG PVIIFLVKER VLCEGNRREI  360
RDFEVLYSRT AGEVRCICSC FNFYGYLCRH ALCVLNFNGV EEIPSRYILS RWKKDYKRLH  420
IPDHNTGVPD DIDHSQWSNQ LFRSALQVVE EGTVSVDHYN VALHAIEESL NKIDDGSPNS  480
DQLLEVADEQ NILVNGCGQL FEIDGSEHEN GRDETTVIDG YGGESQGKGY PPPVVGMEFD  540
TYDDAYNYYN SYAKEIGFAI RVKSSWTRRN SKEKRGAVLC CNCEGFKTLK EANSHRKETR  600
TGCLAMIRLR SVESNRWRVD EVKLEHNHSF DPERAQNSKS HKRTDGGSKR KLEPTLDVEV  660
RTIKLYRMPV GDASGYGSPN SNEGGTSTNL NFSRHLKLRK VMEQKRKTEA IDDFKSRDSS  720
PSLRTRYYYE LQLSKLYTNA MFRKVQEEIV MMSSCFGITE SQTNGSTATY MVKERQGEEL  780
VQDAGHVEVT YDKTGAEVRC SCCCFNFKGY LCRHALSILD YNGVEEIPCQ YVLPRWRKDF  840
KRLYVPHLSS DNVDITNPVQ CFDHLYKRAM QVVEEGMISQ AHYMVSWQAF KESLNKIRLV  900
SDKIE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.DL3EU

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015959095.1	0.0	uncharacterized protein LOC107483010
Swissprot	Q9SSQ4	1e-106	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A445DIY1	0.0	A0A445DIY1_ARAHY; Uncharacterized protein
STRING	XP_004486559.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-108	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]