PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DQR3M
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 347aa    MW: 39521.9 Da    PI: 7.3439
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DQR3MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.5e-5381351128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeel+v+yLk+k+++ +l++  +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ ++
  Aradu.DQR3M   8 LPPGFRFHPTDEELIVHYLKRKASSAPLPV-AIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIIASdGQ 104
                  79****************************.88***************8888999*************************************999566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +  g+kk Lvfy g+ pkg+kt+W+mheyrl
  Aradu.DQR3M 105 HRLGVKKALVFYGGKPPKGVKTNWIMHEYRL 135
                  779**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-635182IPR003441NAC domain
PROSITE profilePS5100560.2338182IPR003441NAC domain
PfamPF023658.3E-289135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDSCQPQLPP GFRFHPTDEE LIVHYLKRKA SSAPLPVAII ADVDLYKFDP WELPSKATFG  60
EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPIIA SDGQHRLGVK KALVFYGGKP  120
PKGVKTNWIM HEYRLTTTHN NNSISSKSFP SLPSHLPSSN QKNNSLRVSI LDDWVLCRIY  180
EKSNRGNFAR TALMEHHDHD DDDDNNKDQL SAETTSMIEN MSTMSQNSKP TQHYGPLLVQ  240
NDDNFFNGIL VADHQNHQHH NLPMKRALVN MNNSQFWNET SKRFHCDLNN NTNTTVANND  300
EDNSSFVSLL SHNQIPHPTN NASLLGPTVA DGVFRQHFQL QTINWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-72518417170NAC domain-containing protein 19
3swm_B6e-72518417170NAC domain-containing protein 19
3swm_C6e-72518417170NAC domain-containing protein 19
3swm_D6e-72518417170NAC domain-containing protein 19
3swp_A6e-72518417170NAC domain-containing protein 19
3swp_B6e-72518417170NAC domain-containing protein 19
3swp_C6e-72518417170NAC domain-containing protein 19
3swp_D6e-72518417170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DQR3M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-39AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025622047.10.0NAC transcription factor 25
SwissprotQ8GY426e-95NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A444WYC80.0A0A444WYC8_ARAHY; Uncharacterized protein
STRINGXP_007148205.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-90NAC domain containing protein 25