PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.DU72E

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 233aa MW: 27457.4 Da PI: 5.2388

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.DU72E	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.2	2e-16	89	159	1	71
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkke 71 +fYn+YA++ GFs rk++++k+ r g + ++fvC +eg+r +++ + +r++++e r+gC a+++++ + Aradu.DU72E 89 EFYNRYARTRGFSARKNRTRKT-RAGVLKLKNFVCHREGFRPQNNYGiGNLKRKPTPEIRCGCSAMMEIRVD 159 6***************9998.8888**********999888788999**************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-13	89	159	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGQEFSHEGV NSEHTSYNQY EKEEEKHEKV DVDYMDENDT NVKPMFDYVG FDEGYNIDSL 60 EDIGMIEFRN IRDEDVCHFH FSDVNIAFEF YNRYARTRGF SARKNRTRKT RAGVLKLKNF 120 VCHREGFRPQ NNYGIGNLKR KPTPEIRCGC SAMMEIRVDC DMDGHNRTTC RVRHGISQLE 180 GHGNDTFIND SDDHMNIEDD SLALYEALMS LEELLAYINS QEEARLRKKK FYW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.DU72E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016164871.2	1e-102	uncharacterized protein LOC107607423
Refseq	XP_025664973.1	1e-102	uncharacterized protein LOC112763541
TrEMBL	A0A445CEZ1	1e-111	A0A445CEZ1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23654	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	4e-09	FAR1-related sequence 10