PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.DZM1K

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 1679aa MW: 189579 Da PI: 6.4703

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.DZM1K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.6	6.8e-16	3	49	11	57
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 qle+Le+ + + yps++ r+eL++klgL++rq ++WF+ rR k++k Aradu.DZM1K 3 QLEVLEKTYVGEAYPSEAVRAELSAKLGLSDRQLQMWFCHRRLKDRK 49 9********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.127	1	50	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-13	2	50	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.25E-12	2	49	IPR009057	Homeodomain-like
CDD	cd00086	8.87E-12	3	50	No hit	No description
SMART	SM00389	1.2E-6	3	54	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-13	3	49	IPR001356	Homeobox domain
SMART	SM00571	2.8E-13	495	556	IPR018501	DDT domain
PROSITE profile	PS50827	12.483	497	556	IPR018501	DDT domain
Pfam	PF02791	3.6E-14	505	553	IPR018501	DDT domain
Pfam	PF05066	2.3E-14	678	745	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	6.1E-8	891	929	IPR028942	WHIM1 domain
Pfam	PF15613	3.9E-12	1074	1145	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1679 aa Download sequence Send to blast
AFQLEVLEKT YVGEAYPSEA VRAELSAKLG LSDRQLQMWF CHRRLKDRKS APTAKKPRND 60 HPPVARDSVP VGEGLEQMAV ADAMHDCGLA SGLKPFGYSD PRQVVPNPSI SFPRRGAGLP 120 TMENNSYYEP HQAIEVLRAI TFVERQLGQP LREDGPILGM EFHSLPPGAF GAPIEEVTLG 180 QHRHSGSPFE AKIYDQRNKG IPRTLHEYQF IPEQLTVRNE TFDRVAPTIH YSSPDGISHS 240 RTSLPSQKSL LGGNESTPYG YGVQDQMPAL NHLSQHVRQN HVLPFASGQI EGIPRKNTFV 300 DVTVVTHSGV HPITLTDTAL VPSDNTVIHE EEPSRFQRKQ MNEEARIRRE LEAHEKRVRK 360 EIEKQDILRR KREEQIKKEM ERNNRERRKE EERLLRERQR EEERYQREQR RDLERREKLL 420 QKESMRAEKL KQKEELRREK EAARIKAAYE RTLARRMTRE SMGLIEDERL ELMELATLKK 480 RLPSILALDY ETMQNLEWAN TIPTQVWRFL NTFADVLGIW SFTLDELIQA FHDYDPRLLG 540 EIHIALLRSI MKDIEDVART PSTGSGGNQN NVANYGGGHP QVVEGAYVWG FDIRNWQRHL 600 NPLTWPEILR QFALSAGFGP KLQRHSELVH PCDNNEGHDC KDIISHLRSG AAVKNAVAIM 660 QEKGLSKPSR SRHHLTPGTV KFAAFHVLSV EGSNGLNILE VAEKIQKSGL RDLTTSKTPE 720 ASISAALSRD TKLFERIAPL TYCVRPAYRK DLSDAEAIFS AARERIRVFK SGYMDAGEAE 780 EGGREDDSEN DVAEDIETDD LGAETNIKNG GFSSVEFNSK TVMRIRKDTG KVSQTLGCYD 840 HEKLDEDILS IVSEGIDMHK GISASCDIAV CSNDVSNPNL EGMDIDESIP DESWVQGLME 900 GEYSDLSVEE RLNALIALVN VAIEGNLIRV TLEDRLEAAN ALKKQMWAEA QLGKRRIKED 960 YFVKMHPVSN FSNKSESNSA FPSLEGKQKP FLSVDNKNDE ALLTPLGQCN QINELLENPN 1020 HIESSSFEVS HQLHRSSANQ DNYSFQQFGF APEKSRSNIK SYIGYLAEQT YMYRTLPLGL 1080 DRRHNRYWQF ITSASPNDPG CGRIFVELHD GCWKLIDSEK GFDSLLGSLD VRGIRESHLH 1140 MMLQSIEMAF KESIRRNVHN GDARMENGDT VKRLKTEAFE VDTNNYCSDI HHPTSVCIDN 1200 SDASEVSTSF AVQLGRNEAE NRDALLRYQD FEKWMLNECL NSSILCALKF GKRRRSKLLT 1260 VCDSCHDVYF FDRIKCPSCN RTLNAHGKAK IDTDYFHVSS YLPLRMRLLK VLLSIVEDSV 1320 PEEAFHGIWT NSYRKSWCTK LDACSSTEDL LEILTVLESA IKREYLDSNY ETTSELLGSL 1380 NSSGCPPTND FVGAERILPW VPCTTAAVAL RLMELDACTS YTFQQKMESE KDKRIGIVTK 1440 LPTKYASAKS SCRDSAIEER GQTSQQGQRS QQGQSMHKVK HTVENMVGLG AGLASYSRGQ 1500 RSRQGRSHSC VSGRSQGRIL NSRHDSRKRS TTSSSMKIGN LLGWKGRPCR HAEQNVRGRR 1560 SVRSRQKPAV KVEKDTPDDI TGYTAGIFIN EKMNGSEVEA AARSASSSEK SAYENDIYQS 1620 TVDADEYLID DNNNDGYEGG FSGKSENFAE GSNHTDAGEN ADQNMDPNGT DSTSLEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1679 aa Download sequence Send to blast

AFQLEVLEKT YVGEAYPSEA VRAELSAKLG LSDRQLQMWF CHRRLKDRKS APTAKKPRND  60
HPPVARDSVP VGEGLEQMAV ADAMHDCGLA SGLKPFGYSD PRQVVPNPSI SFPRRGAGLP  120
TMENNSYYEP HQAIEVLRAI TFVERQLGQP LREDGPILGM EFHSLPPGAF GAPIEEVTLG  180
QHRHSGSPFE AKIYDQRNKG IPRTLHEYQF IPEQLTVRNE TFDRVAPTIH YSSPDGISHS  240
RTSLPSQKSL LGGNESTPYG YGVQDQMPAL NHLSQHVRQN HVLPFASGQI EGIPRKNTFV  300
DVTVVTHSGV HPITLTDTAL VPSDNTVIHE EEPSRFQRKQ MNEEARIRRE LEAHEKRVRK  360
EIEKQDILRR KREEQIKKEM ERNNRERRKE EERLLRERQR EEERYQREQR RDLERREKLL  420
QKESMRAEKL KQKEELRREK EAARIKAAYE RTLARRMTRE SMGLIEDERL ELMELATLKK  480
RLPSILALDY ETMQNLEWAN TIPTQVWRFL NTFADVLGIW SFTLDELIQA FHDYDPRLLG  540
EIHIALLRSI MKDIEDVART PSTGSGGNQN NVANYGGGHP QVVEGAYVWG FDIRNWQRHL  600
NPLTWPEILR QFALSAGFGP KLQRHSELVH PCDNNEGHDC KDIISHLRSG AAVKNAVAIM  660
QEKGLSKPSR SRHHLTPGTV KFAAFHVLSV EGSNGLNILE VAEKIQKSGL RDLTTSKTPE  720
ASISAALSRD TKLFERIAPL TYCVRPAYRK DLSDAEAIFS AARERIRVFK SGYMDAGEAE  780
EGGREDDSEN DVAEDIETDD LGAETNIKNG GFSSVEFNSK TVMRIRKDTG KVSQTLGCYD  840
HEKLDEDILS IVSEGIDMHK GISASCDIAV CSNDVSNPNL EGMDIDESIP DESWVQGLME  900
GEYSDLSVEE RLNALIALVN VAIEGNLIRV TLEDRLEAAN ALKKQMWAEA QLGKRRIKED  960
YFVKMHPVSN FSNKSESNSA FPSLEGKQKP FLSVDNKNDE ALLTPLGQCN QINELLENPN  1020
HIESSSFEVS HQLHRSSANQ DNYSFQQFGF APEKSRSNIK SYIGYLAEQT YMYRTLPLGL  1080
DRRHNRYWQF ITSASPNDPG CGRIFVELHD GCWKLIDSEK GFDSLLGSLD VRGIRESHLH  1140
MMLQSIEMAF KESIRRNVHN GDARMENGDT VKRLKTEAFE VDTNNYCSDI HHPTSVCIDN  1200
SDASEVSTSF AVQLGRNEAE NRDALLRYQD FEKWMLNECL NSSILCALKF GKRRRSKLLT  1260
VCDSCHDVYF FDRIKCPSCN RTLNAHGKAK IDTDYFHVSS YLPLRMRLLK VLLSIVEDSV  1320
PEEAFHGIWT NSYRKSWCTK LDACSSTEDL LEILTVLESA IKREYLDSNY ETTSELLGSL  1380
NSSGCPPTND FVGAERILPW VPCTTAAVAL RLMELDACTS YTFQQKMESE KDKRIGIVTK  1440
LPTKYASAKS SCRDSAIEER GQTSQQGQRS QQGQSMHKVK HTVENMVGLG AGLASYSRGQ  1500
RSRQGRSHSC VSGRSQGRIL NSRHDSRKRS TTSSSMKIGN LLGWKGRPCR HAEQNVRGRR  1560
SVRSRQKPAV KVEKDTPDDI TGYTAGIFIN EKMNGSEVEA AARSASSSEK SAYENDIYQS  1620
TVDADEYLID DNNNDGYEGG FSGKSENFAE GSNHTDAGEN ADQNMDPNGT DSTSLEYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1247	1253	LKFGKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.DZM1K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015953692.1	0.0	homeobox-DDT domain protein RLT2
TrEMBL	A0A445E008	0.0	A0A445E008_ARAHY; Uncharacterized protein
STRING	GLYMA06G44290.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator